Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.631-201ENST00000459607 101 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 RPL21P41-201ENST00000459863 264 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC010285.1-201ENST00000470580 392 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC108860.1-201ENST00000484521 383 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AL049874.1-201ENST00000489560 388 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXA4Q00056 MLLT10P2-201ENST00000506434 249 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AC093303.1-201ENST00000514549 295 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 RNU6-1332P-201ENST00000516666 104 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA4Q00056 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA4Q00056 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXA4Q00056 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA4Q00056 IMMP1LP2-201ENST00000552954 492 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXA4Q00056 SNORD84-203ENST00000584275 78 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXA4Q00056 MIR432-201ENST00000606207 94 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC131238.1-201ENST00000617135 328 ntBASIC3.46□□□□□ -1.86
HOXA4Q00056 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC3.46□□□□□ -1.86
HOXA4Q00056 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC3.46□□□□□ -1.86
HOXA4Q00056 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
HOXA4Q00056 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA4Q00056 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXA4Q00056 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXA4Q00056 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.45□□□□□ -1.86
HOXA4Q00056 LINC01109-201ENST00000603837 3081 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AC004925.1-201ENST00000624256 2706 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA4Q00056 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA4Q00056 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA4Q00056 RNU6-562P-201ENST00000362731 107 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 SNORD35B-201ENST00000363660 87 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RNU6-1188P-201ENST00000363795 107 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 Y_RNA.187-201ENST00000363918 113 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RNU6-335P-201ENST00000364563 113 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 U3.15-201ENST00000365398 212 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA4Q00056 Y_RNA.482-201ENST00000384377 111 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RNU1-13P-201ENST00000384499 162 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXA4Q00056 AC245054.2-201ENST00000415639 319 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RPL21P90-201ENST00000415692 466 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXA4Q00056 AL356095.1-201ENST00000417217 199 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RPL7P10-201ENST00000417407 739 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 BTF3L4P3-201ENST00000418879 476 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RPL21P109-201ENST00000422213 475 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AL590632.1-201ENST00000424289 371 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 AL451062.2-201ENST00000427515 271 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXA4Q00056 HMGB1P27-201ENST00000431429 603 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 HSFY6P-201ENST00000445573 403 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 FGF7P3-201ENST00000454645 303 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 snoU13.24-201ENST00000458998 104 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RN7SL604P-201ENST00000492589 296 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXA4Q00056 RNU6-1213P-201ENST00000517075 94 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 RANP9-201ENST00000519957 271 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 RNU6-323P-201ENST00000521915 107 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 IFITM8P-201ENST00000522529 394 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXA4Q00056 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXA4Q00056 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.45□□□□□ -1.86
HOXA4Q00056 PARP1P2-201ENST00000556806 195 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXA4Q00056 CYP4A43P-201ENST00000568156 121 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AC012603.1-201ENST00000606424 528 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 AC040896.1-201ENST00000613819 479 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 AC022418.1-201ENST00000624118 445 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 ZNF285B-201ENST00000561698 1767 ntBASIC3.45□□□□□ -1.86
HOXA4Q00056 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.45□□□□□ -1.86
HOXA4Q00056 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXA4Q00056 AL592182.3-201ENST00000642132 3304 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
HOXA4Q00056 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 OR4G2P-202ENST00000641004 1759 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
HOXA4Q00056 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
HOXA4Q00056 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC3.44□□□□□ -1.86
HOXA4Q00056 RNA5SP52-201ENST00000362448 134 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 Y_RNA.31-201ENST00000362574 102 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 RNA5SP515-201ENST00000364570 118 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 RNA5SP283-201ENST00000365604 119 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 Y_RNA.534-201ENST00000384599 112 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 MIR606-201ENST00000384851 96 ntBASIC3.44□□□□□ -1.86
HOXA4Q00056 AL360182.1-201ENST00000397433 468 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms