Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD3P31249 OR11H5P-201ENST00000554039 926 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.17□□□□□ -1.9
HOXD3P31249 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXD3P31249 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.17□□□□□ -1.9
HOXD3P31249 AC092747.3-201ENST00000603769 301 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AP001330.4-201ENST00000604350 154 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 ATP1B3P1-201ENST00000605365 821 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC016727.1-205ENST00000605437 569 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 AC022893.3-201ENST00000607665 437 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 MIR6500-201ENST00000622700 86 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.17□□□□□ -1.9
HOXD3P31249 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 AC004925.1-201ENST00000624256 2706 ntBASIC3.17□□□□□ -1.9
HOXD3P31249 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
HOXD3P31249 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.17□□□□□ -1.9
HOXD3P31249 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD3P31249 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.16□□□□□ -1.9
HOXD3P31249 OR4G2P-202ENST00000641004 1759 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 MAPK10-372ENST00000641954 3413 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 SNORA60-201ENST00000362396 134 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 RNA5SP387-201ENST00000364226 106 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 SNORD6-201ENST00000365444 73 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 Y_RNA.414-201ENST00000384011 101 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 SNORA16.2-201ENST00000390991 127 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AL592114.1-201ENST00000403842 483 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 RNU6-387P-201ENST00000411331 105 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 POLHP1-201ENST00000411806 470 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 AC005019.1-201ENST00000436455 431 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD3P31249 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD3P31249 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
HOXD3P31249 Y_RNA.682-201ENST00000516457 100 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 AP000763.2-201ENST00000540641 163 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 MED28P6-201ENST00000558776 231 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 HSPE1P5-201ENST00000561489 272 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 ZNF192P1-203ENST00000565888 810 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.16□□□□□ -1.9
HOXD3P31249 RPL23AP87-202ENST00000573039 466 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 MIR5685-201ENST00000579080 79 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 MIR4644-201ENST00000579929 84 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 AL670379.10-201ENST00000604330 253 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AL670379.9-201ENST00000605428 253 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 AC012531.5-201ENST00000611375 151 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 uc_338.15-201ENST00000615470 191 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.16□□□□□ -1.9
HOXD3P31249 CR392039.5-201ENST00000623201 510 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 MTND5P42-201ENST00000637720 498 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 AL365440.1-201ENST00000436135 2167 ntBASIC3.16□□□□□ -1.9
HOXD3P31249 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC3.16□□□□□ -1.9
HOXD3P31249 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
HOXD3P31249 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD3P31249 AF127577.6-201ENST00000623352 2191 ntBASIC3.15□□□□□ -1.9
HOXD3P31249 AC011266.1-201ENST00000624119 3569 ntBASIC3.15□□□□□ -1.9
HOXD3P31249 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD3P31249 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD3P31249 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
HOXD3P31249 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.15□□□□□ -1.9
HOXD3P31249 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
HOXD3P31249 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
HOXD3P31249 RNU5A-1-201ENST00000362698 116 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 SNORD35B-201ENST00000363660 87 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 SNORA70.4-201ENST00000365509 134 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 RNU6-190P-201ENST00000384154 102 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 Y_RNA.530-201ENST00000384587 101 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 RNA5SP219-201ENST00000390940 113 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD3P31249 RNU4-14P-201ENST00000410858 122 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 RNU6-1304P-201ENST00000411374 106 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 HSPE1P12-201ENST00000412576 301 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 RPS12P24-201ENST00000412619 387 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 RPS20P15-201ENST00000412792 311 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 BX682237.1-201ENST00000415016 335 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 BX842559.1-201ENST00000419615 532 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC091390.3-201ENST00000426478 338 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AL691449.1-201ENST00000426570 421 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC018644.1-201ENST00000429934 551 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 AC069285.2-201ENST00000440210 275 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC104058.1-201ENST00000448028 297 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC3.15□□□□□ -1.91
HOXD3P31249 Y_RNA.632-201ENST00000459189 102 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 SNRPGP3-201ENST00000469405 227 ntBASIC3.15□□□□□ -1.91
HOXD3P31249 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.15□□□□□ -1.91
HOXD3P31249 PPBPP1-201ENST00000510807 373 ntBASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 132.5 ms