Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 RPS27AP1-201ENST00000475545 471 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC4.12□□□□□ -1.75
SMARCA1P28370 MTCYBP18-201ENST00000501056 747 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 AC018710.1-201ENST00000506509 158 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 AC098799.2-201ENST00000509466 868 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.12□□□□□ -1.75
SMARCA1P28370 RNA5SP468-201ENST00000516782 93 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 AP006245.1-201ENST00000522549 120 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
SMARCA1P28370 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC4.12□□□□□ -1.75
SMARCA1P28370 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.12□□□□□ -1.75
SMARCA1P28370 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.12□□□□□ -1.75
SMARCA1P28370 NRBF2P5-201ENST00000603087 788 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 AP001330.4-201ENST00000604350 154 ntBASIC4.12□□□□□ -1.75
SMARCA1P28370 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.12□□□□□ -1.75
SMARCA1P28370 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.12□□□□□ -1.75
SMARCA1P28370 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMARCA1P28370 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMARCA1P28370 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
SMARCA1P28370 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
SMARCA1P28370 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
SMARCA1P28370 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
SMARCA1P28370 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC4.11□□□□□ -1.75
SMARCA1P28370 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.11□□□□□ -1.75
SMARCA1P28370 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.11□□□□□ -1.75
SMARCA1P28370 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
SMARCA1P28370 RNA5SP171-201ENST00000391071 115 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
SMARCA1P28370 MTATP6P4-201ENST00000427725 675 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC4.11□□□□□ -1.75
SMARCA1P28370 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.11□□□□□ -1.75
SMARCA1P28370 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC4.11□□□□□ -1.75
SMARCA1P28370 AL121601.2-201ENST00000438019 707 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 RPS29P15-201ENST00000458329 171 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 AC105417.1-201ENST00000514691 285 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 RNU2-27P-201ENST00000516185 142 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 NARSP2-201ENST00000518524 679 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 OR5B10P-201ENST00000532869 642 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 OR4H12P-201ENST00000556269 907 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 AL357078.3-201ENST00000607528 618 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 DISC2.1-201ENST00000612827 205 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 FRG1KP-201ENST00000623592 341 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 AC009033.1-201ENST00000624279 431 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 U6.98-201ENST00000637157 84 ntBASIC4.11□□□□□ -1.75
SMARCA1P28370 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.11□□□□□ -1.75
SMARCA1P28370 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.11□□□□□ -1.75
SMARCA1P28370 MTND5P17-201ENST00000418405 1603 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SMARCA1P28370 Y_RNA.70-201ENST00000362886 110 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 SNORA24.1-201ENST00000384401 135 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 MIR670-201ENST00000390142 98 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 TXNP7-201ENST00000406296 293 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 USP12PX-201ENST00000432383 1057 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC024082.2-201ENST00000434771 238 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 MTND4P25-201ENST00000441039 533 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 CALM1P1-201ENST00000442082 433 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 MTND5P20-201ENST00000448677 143 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC4.1□□□□□ -1.75
SMARCA1P28370 HMGN2P16-201ENST00000456802 261 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 U3.44-201ENST00000458938 192 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC084357.1-201ENST00000473404 255 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC4.1□□□□□ -1.75
SMARCA1P28370 VN1R104P-201ENST00000505115 1009 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC092436.1-201ENST00000506450 503 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC4.1□□□□□ -1.75
SMARCA1P28370 RNU6-390P-201ENST00000516259 103 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC4.1□□□□□ -1.75
SMARCA1P28370 SUB1P1-201ENST00000524415 382 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AP005435.4-201ENST00000529514 284 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 OR5B19P-201ENST00000531766 928 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 OR5AL2P-201ENST00000532185 920 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.1□□□□□ -1.75
SMARCA1P28370 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC4.1□□□□□ -1.75
SMARCA1P28370 MIR3186-201ENST00000577404 85 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
SMARCA1P28370 AC005730.3-201ENST00000583067 366 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.1□□□□□ -1.75
SMARCA1P28370 AC010338.1-201ENST00000621823 717 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC092628.2-201ENST00000622492 339 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.1□□□□□ -1.75
SMARCA1P28370 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.1□□□□□ -1.75
SMARCA1P28370 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SMARCA1P28370 AC091152.2-201ENST00000591628 2569 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 AC007656.2-201ENST00000624902 4547 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SMARCA1P28370 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.1□□□□□ -1.75
SMARCA1P28370 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC4.1□□□□□ -1.75
SMARCA1P28370 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
SMARCA1P28370 AL672296.1-201ENST00000427780 2158 ntBASIC4.1□□□□□ -1.75
SMARCA1P28370 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SMARCA1P28370 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
SMARCA1P28370 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.09□□□□□ -1.75
SMARCA1P28370 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC4.09□□□□□ -1.75
SMARCA1P28370 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SMARCA1P28370 SMIM11P1-201ENST00000369586 178 ntBASIC4.09□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms