Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC004520.1-201ENST00000608362 1413 ntBASIC1.55□□□□□ -2.16
HLA-DMBP28068 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 Y_RNA.25-201ENST00000362528 102 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 RNU6-216P-201ENST00000363282 104 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 RNU6-884P-201ENST00000363889 107 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 Y_RNA.548-201ENST00000384656 105 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 SNRPEP2-201ENST00000397592 279 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL030996.1-201ENST00000411430 235 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 BPY2DP-201ENST00000422208 265 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL451074.3-201ENST00000437709 472 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 RPL26P9-201ENST00000457466 433 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC080013.2-201ENST00000460866 323 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 HESX1-202ENST00000473921 757 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 MTCO2P9-201ENST00000503214 694 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 TMEM251P1-201ENST00000503717 318 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 SNORA31.6-201ENST00000516241 130 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 RNU7-193P-201ENST00000516723 65 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 RNU2-44P-201ENST00000516795 194 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 YWHAZP1-201ENST00000556286 722 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC005951.2-201ENST00000576282 495 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC090615.1-201ENST00000577519 154 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL158827.2-201ENST00000602494 330 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC011451.2-201ENST00000604303 598 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL158211.4-201ENST00000606988 584 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC120053.1-201ENST00000607706 736 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL590099.1-201ENST00000615276 138 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC084824.4-201ENST00000620106 731 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL157770.1-201ENST00000623049 439 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 AL691447.3-201ENST00000635020 330 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 MIR219B-201ENST00000637023 88 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 MIR1322-201ENST00000638013 71 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 MTCO1P9-201ENST00000505577 1534 ntBASIC1.54□□□□□ -2.16
HLA-DMBP28068 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.54□□□□□ -2.16
HLA-DMBP28068 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
HLA-DMBP28068 RPL17P12-201ENST00000413391 526 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 CYCSP48-201ENST00000417124 323 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
HLA-DMBP28068 Z98742.2-201ENST00000431564 187 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC092427.1-201ENST00000439177 601 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC016691.1-201ENST00000441321 413 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AL353718.1-201ENST00000451028 517 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 RPL12P25-201ENST00000455592 494 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 SNORD121B-201ENST00000458838 81 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 RNA5SP233-201ENST00000459153 113 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AL121769.1-201ENST00000469473 401 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 LTV1P1-201ENST00000510683 1237 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 snoZ278.1-201ENST00000517059 112 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 HSPE1P18-201ENST00000517602 280 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC022861.1-201ENST00000522981 663 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AP001189.2-201ENST00000527320 189 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC138915.2-201ENST00000569776 97 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 AC012493.3-201ENST00000604494 112 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AL390208.1-201ENST00000605885 644 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 SDR42E1P2-201ENST00000614861 481 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 SDR42E1P4-201ENST00000620894 481 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 AL356266.1-201ENST00000623311 483 ntBASIC1.53□□□□□ -2.16
HLA-DMBP28068 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.53□□□□□ -2.16
HLA-DMBP28068 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.17
HLA-DMBP28068 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.17
HLA-DMBP28068 HSPA8P4-201ENST00000511877 1920 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
HLA-DMBP28068 AC010889.1-201ENST00000566193 2666 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
HLA-DMBP28068 SNORD114-1-201ENST00000362705 72 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
HLA-DMBP28068 MIR504-201ENST00000385065 83 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 RPL23AP29-201ENST00000397284 453 ntBASIC1.52□□□□□ -2.17
HLA-DMBP28068 DHFRP6-201ENST00000401776 268 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms