Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 BX510359.1-201ENST00000456973 237 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.15□□□□□ -1.91
MSH3P20585 AC091179.1-201ENST00000461606 579 ntBASIC3.15□□□□□ -1.91
MSH3P20585 RN7SL863P-201ENST00000462370 296 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC3.15□□□□□ -1.91
MSH3P20585 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.15□□□□□ -1.91
MSH3P20585 AC114797.1-201ENST00000514003 728 ntBASIC3.15□□□□□ -1.91
MSH3P20585 RNU6-445P-201ENST00000516949 107 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.15□□□□□ -1.91
MSH3P20585 OR5G4P-201ENST00000525251 760 ntBASIC3.15□□□□□ -1.91
MSH3P20585 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
MSH3P20585 SNRPGP16-201ENST00000533275 226 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC3.15□□□□□ -1.91
MSH3P20585 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.15□□□□□ -1.91
MSH3P20585 TPRKBP2-201ENST00000565969 475 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC008277.2-201ENST00000605196 797 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AP000860.1-201ENST00000605250 559 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC007684.1-201ENST00000609671 477 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AC096577.2-201ENST00000611455 153 ntBASIC3.15□□□□□ -1.91
MSH3P20585 TUG1_2.1-201ENST00000614234 87 ntBASIC3.15□□□□□ -1.91
MSH3P20585 AL355810.1-201ENST00000614629 552 ntBASIC3.15□□□□□ -1.91
MSH3P20585 SEPT14P19-203ENST00000633205 211 ntBASIC3.15□□□□□ -1.91
MSH3P20585 LRRC77P-213ENST00000637727 880 ntBASIC3.15□□□□□ -1.91
MSH3P20585 OR5H6-203ENST00000642105 978 ntBASIC3.15□□□□□ -1.91
MSH3P20585 TAB3P1-202ENST00000452645 1634 ntBASIC3.15□□□□□ -1.91
MSH3P20585 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.15□□□□□ -1.91
MSH3P20585 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
MSH3P20585 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.14□□□□□ -1.91
MSH3P20585 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 AC005832.2-201ENST00000538921 1430 ntBASIC3.14□□□□□ -1.91
MSH3P20585 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 RNU6-511P-201ENST00000363496 107 ntBASIC3.14□□□□□ -1.91
MSH3P20585 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
MSH3P20585 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 YPEL5P1-201ENST00000419731 367 ntBASIC3.14□□□□□ -1.91
MSH3P20585 ELOCP4-201ENST00000420090 333 ntBASIC3.14□□□□□ -1.91
MSH3P20585 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH3P20585 AC012498.1-201ENST00000424037 437 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC016696.1-201ENST00000446949 318 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AL162389.1-201ENST00000449233 177 ntBASIC3.14□□□□□ -1.91
MSH3P20585 PSPHP1-201ENST00000450062 261 ntBASIC3.14□□□□□ -1.91
MSH3P20585 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AL049714.1-201ENST00000466686 347 ntBASIC3.14□□□□□ -1.91
MSH3P20585 RPS3AP14-201ENST00000483907 780 ntBASIC3.14□□□□□ -1.91
MSH3P20585 MLLT10P2-201ENST00000506434 249 ntBASIC3.14□□□□□ -1.91
MSH3P20585 KLHL2P1-201ENST00000508691 521 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC3.14□□□□□ -1.91
MSH3P20585 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH3P20585 RNU6-64P-201ENST00000517119 105 ntBASIC3.14□□□□□ -1.91
MSH3P20585 RNU6-1220P-201ENST00000517126 108 ntBASIC3.14□□□□□ -1.91
MSH3P20585 SNORA31.22-201ENST00000517204 135 ntBASIC3.14□□□□□ -1.91
MSH3P20585 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.14□□□□□ -1.91
MSH3P20585 AP003072.2-201ENST00000527756 676 ntBASIC3.14□□□□□ -1.91
MSH3P20585 FAM92A1P1-201ENST00000528023 890 ntBASIC3.14□□□□□ -1.91
MSH3P20585 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.14□□□□□ -1.91
MSH3P20585 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.14□□□□□ -1.91
MSH3P20585 ZNF519P2-201ENST00000557032 169 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC074050.1-201ENST00000563247 211 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC136619.2-201ENST00000563361 631 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.14□□□□□ -1.91
MSH3P20585 MIR4293-201ENST00000584305 78 ntBASIC3.14□□□□□ -1.91
MSH3P20585 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.14□□□□□ -1.91
MSH3P20585 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
MSH3P20585 MIR6863-201ENST00000636112 90 ntBASIC3.14□□□□□ -1.91
MSH3P20585 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.14□□□□□ -1.91
MSH3P20585 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
MSH3P20585 AC009812.4-201ENST00000569134 1805 ntBASIC3.14□□□□□ -1.91
MSH3P20585 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
MSH3P20585 CDK1-201ENST00000316629 1733 ntTSL 5 BASIC3.13□□□□□ -1.91
MSH3P20585 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
MSH3P20585 DDX10P1-201ENST00000448545 1933 ntBASIC3.13□□□□□ -1.91
MSH3P20585 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.13□□□□□ -1.91
MSH3P20585 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
MSH3P20585 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.13□□□□□ -1.91
MSH3P20585 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.13□□□□□ -1.91
MSH3P20585 UBE2FP1-201ENST00000416536 447 ntBASIC3.13□□□□□ -1.91
MSH3P20585 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC3.13□□□□□ -1.91
MSH3P20585 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.13□□□□□ -1.91
MSH3P20585 AC009969.1-201ENST00000438726 172 ntBASIC3.13□□□□□ -1.91
MSH3P20585 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC3.13□□□□□ -1.91
MSH3P20585 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.13□□□□□ -1.91
MSH3P20585 AC126182.1-201ENST00000478134 357 ntBASIC3.13□□□□□ -1.91
MSH3P20585 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.13□□□□□ -1.91
MSH3P20585 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.13□□□□□ -1.91
MSH3P20585 AC010493.1-201ENST00000513479 292 ntBASIC3.13□□□□□ -1.91
MSH3P20585 AL117351.2-201ENST00000513571 157 ntBASIC3.13□□□□□ -1.91
MSH3P20585 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.13□□□□□ -1.91
MSH3P20585 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.13□□□□□ -1.91
MSH3P20585 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.13□□□□□ -1.91
MSH3P20585 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.13□□□□□ -1.91
MSH3P20585 AC027807.1-201ENST00000559921 996 ntBASIC3.13□□□□□ -1.91
MSH3P20585 FAM60BP-201ENST00000578364 658 ntBASIC3.13□□□□□ -1.91
MSH3P20585 AP001029.3-201ENST00000588063 596 ntBASIC3.13□□□□□ -1.91
MSH3P20585 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.13□□□□□ -1.91
MSH3P20585 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms