Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GAPDHP17-201ENST00000449858 1001 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD4P09016 SNORD121B-201ENST00000458838 81 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 RPS23P3-201ENST00000470993 430 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXD4P09016 MTND1P3-201ENST00000484956 952 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD4P09016 RNU2-46P-201ENST00000517038 113 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC245505.1-201ENST00000556398 224 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXD4P09016 FAM60BP-201ENST00000578364 658 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.83□□□□□ -1.96
HOXD4P09016 AC012119.1-201ENST00000603184 222 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC109347.2-201ENST00000610220 349 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC091304.9-201ENST00000612091 226 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC013476.2-201ENST00000614456 459 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC091834.1-201ENST00000614543 472 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC068792.1-201ENST00000621354 417 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AL137790.1-201ENST00000634283 177 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC010149.2-201ENST00000637608 315 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD4P09016 FAM35BP-202ENST00000497389 3337 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC011460.1-201ENST00000636268 1834 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC103988.1-201ENST00000566382 2177 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 AC009902.3-201ENST00000606235 2172 ntBASIC2.83□□□□□ -1.96
HOXD4P09016 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.83□□□□□ -1.96
HOXD4P09016 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD4P09016 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-1155P-201ENST00000363554 107 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-173P-201ENST00000364215 104 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 SNORA71.1-201ENST00000364523 117 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-1042P-201ENST00000384204 107 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-1215P-201ENST00000384441 102 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
HOXD4P09016 RN7SKP220-201ENST00000410611 288 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-195P-201ENST00000411352 109 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 C1DP2-201ENST00000418167 426 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.82□□□□□ -1.96
HOXD4P09016 AL589872.1-201ENST00000426602 288 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 SAR1AP4-201ENST00000429225 591 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC009961.2-201ENST00000435771 251 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC004866.2-201ENST00000438285 481 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC073614.1-201ENST00000438690 650 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 HMGB3P11-201ENST00000440127 604 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RABEPKP1-201ENST00000440529 1026 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC025750.2-201ENST00000442609 450 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 NDUFAF4P4-201ENST00000454883 502 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC055855.1-201ENST00000489563 579 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-528P-201ENST00000516926 100 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 RNU6-430P-201ENST00000517078 107 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 AP000907.2-201ENST00000530827 353 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD4P09016 AC107016.2-201ENST00000547968 190 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 CR383656.7-201ENST00000548164 174 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AL356432.3-201ENST00000568952 465 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC010546.1-201ENST00000569391 485 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 AP001330.4-201ENST00000604350 154 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 uc_338.25-201ENST00000613756 156 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 AC112204.3-201ENST00000623822 332 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC110994.2-201ENST00000635481 492 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 AC090740.1-201ENST00000623193 2262 ntBASIC2.82□□□□□ -1.96
HOXD4P09016 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD4P09016 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD4P09016 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC2.82□□□□□ -1.96
HOXD4P09016 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.82□□□□□ -1.96
HOXD4P09016 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC2.82□□□□□ -1.96
HOXD4P09016 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
HOXD4P09016 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 RNU6-259P-201ENST00000383999 107 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 Y_RNA.516-201ENST00000384541 124 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 Y_RNA.582-201ENST00000391023 95 ntBASIC2.81□□□□□ -1.96
HOXD4P09016 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
HOXD4P09016 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.81□□□□□ -1.96
HOXD4P09016 AL136372.1-201ENST00000403060 228 ntBASIC2.81□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms