Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 NDUFS5P1-201ENST00000405668 289 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 RNA5SP184-201ENST00000411071 108 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 MTND2P18-201ENST00000419962 1030 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC3.78□□□□□ -1.8
NPHP1O15259 AL356583.2-201ENST00000426536 280 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC3.78□□□□□ -1.8
NPHP1O15259 AC098826.2-201ENST00000452011 651 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.78□□□□□ -1.8
NPHP1O15259 RPS27P29-201ENST00000463110 252 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AC233702.1-201ENST00000482905 502 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
NPHP1O15259 AC107016.2-201ENST00000547968 190 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.78□□□□□ -1.8
NPHP1O15259 AL359999.1-201ENST00000604513 294 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AP000860.1-201ENST00000605250 559 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AC007619.2-201ENST00000605743 379 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AL031775.1-201ENST00000607014 887 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 AL591516.1-201ENST00000611326 274 ntBASIC3.78□□□□□ -1.8
NPHP1O15259 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.78□□□□□ -1.8
NPHP1O15259 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.78□□□□□ -1.8
NPHP1O15259 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NPHP1O15259 ANKRD20A17P-201ENST00000511745 1330 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 CASP3-203ENST00000393588 677 ntTSL 4 BASIC3.77□□□□□ -1.81
NPHP1O15259 RNA5SP31-201ENST00000411144 127 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 ZNF90P2-204ENST00000419323 1075 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AL365496.1-201ENST00000426885 215 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 UBE2D3P4-201ENST00000441973 436 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.77□□□□□ -1.81
NPHP1O15259 MTND1P12-201ENST00000455231 147 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 AC117440.1-201ENST00000474107 571 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 RN7SL432P-201ENST00000484057 298 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 SNORA31.3-201ENST00000516029 96 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 RNA5SP290-201ENST00000517133 127 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.77□□□□□ -1.81
NPHP1O15259 AC104027.1-201ENST00000521887 300 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
NPHP1O15259 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.77□□□□□ -1.81
NPHP1O15259 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.77□□□□□ -1.81
NPHP1O15259 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.77□□□□□ -1.81
NPHP1O15259 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.77□□□□□ -1.81
NPHP1O15259 AC138761.3-201ENST00000579993 334 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC012065.4-201ENST00000602445 679 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AL136363.1-201ENST00000605349 337 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC012360.2-201ENST00000609349 391 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 AC034102.8-201ENST00000615146 484 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NPHP1O15259 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.77□□□□□ -1.81
NPHP1O15259 API5P2-201ENST00000397055 1498 ntBASIC3.77□□□□□ -1.81
NPHP1O15259 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NPHP1O15259 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
NPHP1O15259 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
NPHP1O15259 MTND4P4-201ENST00000439033 1366 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 RNU6-511P-201ENST00000363496 107 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 SNORD56.3-201ENST00000363507 71 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 RNU6-805P-201ENST00000365643 106 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 RNA5SP293-201ENST00000410527 113 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 BTF3L4P3-201ENST00000418879 476 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AC019097.1-201ENST00000424783 735 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 DPPA2P1-201ENST00000428060 556 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.76□□□□□ -1.81
NPHP1O15259 CETN4P-201ENST00000432407 469 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 ARPC3P1-201ENST00000437218 533 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.76□□□□□ -1.81
NPHP1O15259 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.76□□□□□ -1.81
NPHP1O15259 AC093392.2-201ENST00000450682 337 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 SSXP1-201ENST00000453640 473 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 AC092798.1-201ENST00000458542 409 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 RBM43P1-201ENST00000476891 1081 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AC006483.1-201ENST00000487308 313 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC3.76□□□□□ -1.81
NPHP1O15259 AC068657.1-201ENST00000520807 306 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 MRPS36P5-201ENST00000551909 298 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AL391261.3-201ENST00000557194 520 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.76□□□□□ -1.81
NPHP1O15259 AC112191.3-201ENST00000604371 277 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 ATP1B3P1-201ENST00000605365 821 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AC103710.2-201ENST00000609912 942 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 AC009878.1-201ENST00000621819 340 ntBASIC3.76□□□□□ -1.81
NPHP1O15259 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.76□□□□□ -1.81
NPHP1O15259 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
NPHP1O15259 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.75□□□□□ -1.81
NPHP1O15259 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NPHP1O15259 RNU6-1167P-201ENST00000363227 94 ntBASIC3.75□□□□□ -1.81
NPHP1O15259 FCF1P10-201ENST00000407590 479 ntBASIC3.75□□□□□ -1.81
NPHP1O15259 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC3.75□□□□□ -1.81
NPHP1O15259 AC245291.1-201ENST00000419501 328 ntBASIC3.75□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms