Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 APAF1-207ENST00000547743 651 ntTSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 DYNLL1P4-201ENST00000549314 266 ntBASIC4.23□□□□□ -1.73
CBX4O00257 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 AC098826.3-201ENST00000603823 466 ntBASIC4.23□□□□□ -1.73
CBX4O00257 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.23□□□□□ -1.73
CBX4O00257 AC135507.2-201ENST00000612443 309 ntBASIC4.23□□□□□ -1.73
CBX4O00257 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.23□□□□□ -1.73
CBX4O00257 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.23□□□□□ -1.73
CBX4O00257 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CBX4O00257 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CBX4O00257 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC4.23□□□□□ -1.73
CBX4O00257 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CBX4O00257 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
CBX4O00257 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CBX4O00257 RLIMP1-201ENST00000339626 1680 ntBASIC4.22□□□□□ -1.73
CBX4O00257 RPS4XP5-202ENST00000449995 1334 ntBASIC4.22□□□□□ -1.73
CBX4O00257 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CBX4O00257 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CBX4O00257 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
CBX4O00257 RNU6-254P-201ENST00000363377 107 ntBASIC4.22□□□□□ -1.73
CBX4O00257 RNU6-512P-201ENST00000364438 103 ntBASIC4.22□□□□□ -1.73
CBX4O00257 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 AL139397.2-201ENST00000404529 772 ntBASIC4.22□□□□□ -1.73
CBX4O00257 CYP4F29P-201ENST00000420685 446 ntBASIC4.22□□□□□ -1.73
CBX4O00257 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 AC006946.1-201ENST00000429106 328 ntBASIC4.22□□□□□ -1.73
CBX4O00257 VDAC1P3-201ENST00000434069 851 ntBASIC4.22□□□□□ -1.73
CBX4O00257 AC005019.1-201ENST00000436455 431 ntBASIC4.22□□□□□ -1.73
CBX4O00257 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.22□□□□□ -1.73
CBX4O00257 AC069285.2-201ENST00000440210 275 ntBASIC4.22□□□□□ -1.73
CBX4O00257 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC4.22□□□□□ -1.73
CBX4O00257 AC107399.1-201ENST00000451226 265 ntBASIC4.22□□□□□ -1.73
CBX4O00257 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.22□□□□□ -1.73
CBX4O00257 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.22□□□□□ -1.73
CBX4O00257 SNORA14.1-201ENST00000516113 141 ntBASIC4.22□□□□□ -1.73
CBX4O00257 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC4.22□□□□□ -1.73
CBX4O00257 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.22□□□□□ -1.73
CBX4O00257 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC4.22□□□□□ -1.73
CBX4O00257 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 RN7SL703P-201ENST00000578485 302 ntBASIC4.22□□□□□ -1.73
CBX4O00257 MIR548AC-201ENST00000585049 88 ntBASIC4.22□□□□□ -1.73
CBX4O00257 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC4.22□□□□□ -1.73
CBX4O00257 AL050343.2-201ENST00000607338 280 ntBASIC4.22□□□□□ -1.73
CBX4O00257 MIR7702-201ENST00000621931 59 ntBASIC4.22□□□□□ -1.73
CBX4O00257 C2orf27A-204ENST00000623058 969 ntBASIC4.22□□□□□ -1.73
CBX4O00257 Z99571.1-201ENST00000636677 394 ntBASIC4.22□□□□□ -1.73
CBX4O00257 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
CBX4O00257 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.22□□□□□ -1.73
CBX4O00257 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 AC008568.2-201ENST00000623862 2313 ntBASIC4.22□□□□□ -1.73
CBX4O00257 USP8P1-201ENST00000494673 3183 ntBASIC4.22□□□□□ -1.73
CBX4O00257 ZNF285B-201ENST00000561698 1767 ntBASIC4.22□□□□□ -1.73
CBX4O00257 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CBX4O00257 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
CBX4O00257 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CBX4O00257 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
CBX4O00257 MIR448-201ENST00000362131 111 ntBASIC4.21□□□□□ -1.74
CBX4O00257 RNU6-50P-201ENST00000362356 103 ntBASIC4.21□□□□□ -1.74
CBX4O00257 RNA5SP513-201ENST00000364648 118 ntBASIC4.21□□□□□ -1.74
CBX4O00257 MIR450B-201ENST00000401182 78 ntBASIC4.21□□□□□ -1.74
CBX4O00257 RNU2-71P-201ENST00000411395 189 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC063979.1-201ENST00000415539 377 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC016831.2-201ENST00000417179 352 ntBASIC4.21□□□□□ -1.74
CBX4O00257 RPL21P109-201ENST00000422213 475 ntBASIC4.21□□□□□ -1.74
CBX4O00257 RPL23AP69-201ENST00000431134 458 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.21□□□□□ -1.74
CBX4O00257 Y_RNA.635-201ENST00000459041 101 ntBASIC4.21□□□□□ -1.74
CBX4O00257 RPL31P60-201ENST00000478450 367 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AL160314.1-201ENST00000490836 438 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC146944.2-203ENST00000502493 354 ntBASIC4.21□□□□□ -1.74
CBX4O00257 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.21□□□□□ -1.74
CBX4O00257 AC139495.1-202ENST00000513164 354 ntBASIC4.21□□□□□ -1.74
CBX4O00257 CYCSP27-201ENST00000527643 293 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC004024.1-201ENST00000549244 247 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.21□□□□□ -1.74
CBX4O00257 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.21□□□□□ -1.74
CBX4O00257 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.21□□□□□ -1.74
CBX4O00257 AC012119.1-201ENST00000603184 222 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AL161798.1-201ENST00000604630 131 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC006023.2-201ENST00000609916 167 ntBASIC4.21□□□□□ -1.74
CBX4O00257 AC064801.1-201ENST00000612025 407 ntBASIC4.21□□□□□ -1.74
CBX4O00257 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC4.21□□□□□ -1.74
CBX4O00257 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC4.21□□□□□ -1.74
CBX4O00257 AL160413.1-201ENST00000622780 310 ntBASIC4.21□□□□□ -1.74
CBX4O00257 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
CBX4O00257 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.21□□□□□ -1.74
CBX4O00257 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.21□□□□□ -1.74
CBX4O00257 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CBX4O00257 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.21□□□□□ -1.74
CBX4O00257 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CBX4O00257 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CBX4O00257 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CBX4O00257 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms