Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Gm7461-201ENSMUST00000058918 827 ntBASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Haus4-201ENSMUST00000022784 1587 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Gm36858-201ENSMUST00000194501 2391 ntBASIC15.09■□□□□ 0.01
Cdc40Q9DC48 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cdc40Q9DC48 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.08■□□□□ 0.01
Cdc40Q9DC48 Scube3-201ENSMUST00000043503 6699 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Cdc40Q9DC48 Prkcg-202ENSMUST00000172109 2119 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Cdc40Q9DC48 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
Cdc40Q9DC48 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Plxnc1-201ENSMUST00000099337 7302 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Ptprt-202ENSMUST00000109442 7719 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Cdc40Q9DC48 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Cdc40Q9DC48 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Gm27742-201ENSMUST00000184667 60 ntBASIC15.08■□□□□ 0
Cdc40Q9DC48 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC15.08■□□□□ 0
Cdc40Q9DC48 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Cdc40Q9DC48 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Sgpp1-201ENSMUST00000021450 3323 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Cdc40Q9DC48 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Cdc40Q9DC48 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Cdc40Q9DC48 Cd70-201ENSMUST00000019633 842 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Gm18115-201ENSMUST00000221209 621 ntBASIC15.07■□□□□ 0
Cdc40Q9DC48 Chd4-202ENSMUST00000112390 6537 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Cdc40Q9DC48 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Cdc40Q9DC48 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Cdc40Q9DC48 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cdc40Q9DC48 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC15.07■□□□□ 0
Cdc40Q9DC48 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.06■□□□□ 0
Cdc40Q9DC48 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Glg1-204ENSMUST00000169020 7021 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Cdc40Q9DC48 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cdc40Q9DC48 Gm45203-201ENSMUST00000206384 1831 ntBASIC15.06■□□□□ 0
Cdc40Q9DC48 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdc40Q9DC48 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdc40Q9DC48 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdc40Q9DC48 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdc40Q9DC48 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cdc40Q9DC48 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Gm11336-201ENSMUST00000118168 334 ntBASIC15.05■□□□□ -0
Cdc40Q9DC48 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Cdc40Q9DC48 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cdc40Q9DC48 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms