Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
HLA-DOAP06340 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HLA-DOAP06340 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 ISCU-203ENST00000431221 799 ntTSL 2 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 CR769767.2-201ENST00000622735 460 ntBASIC22.49■■□□□ 1.19
HLA-DOAP06340 AL358472.4-201ENST00000633140 710 ntBASIC22.49■■□□□ 1.19
HLA-DOAP06340 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HLA-DOAP06340 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 Z82202.1-201ENST00000623446 1880 ntBASIC22.49■■□□□ 1.19
HLA-DOAP06340 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC22.49■■□□□ 1.19
HLA-DOAP06340 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HLA-DOAP06340 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC22.48■■□□□ 1.19
HLA-DOAP06340 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC22.48■■□□□ 1.19
HLA-DOAP06340 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
HLA-DOAP06340 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HLA-DOAP06340 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 AL671277.2-201ENST00000458060 996 ntBASIC22.47■■□□□ 1.19
HLA-DOAP06340 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 DBP-204ENST00000599385 709 ntTSL 3 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
HLA-DOAP06340 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
HLA-DOAP06340 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 AL121956.5-201ENST00000625261 221 ntBASIC22.46■■□□□ 1.19
HLA-DOAP06340 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.46■■□□□ 1.19
HLA-DOAP06340 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
HLA-DOAP06340 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC22.45■■□□□ 1.19
HLA-DOAP06340 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC22.45■■□□□ 1.19
HLA-DOAP06340 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HLA-DOAP06340 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
HLA-DOAP06340 ILF2-202ENST00000368681 726 ntTSL 2 BASIC22.45■■□□□ 1.18
HLA-DOAP06340 GAD2-202ENST00000376248 680 ntTSL 5 BASIC22.45■■□□□ 1.18
HLA-DOAP06340 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HLA-DOAP06340 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC22.45■■□□□ 1.18
HLA-DOAP06340 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC22.45■■□□□ 1.18
HLA-DOAP06340 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.45■■□□□ 1.18
HLA-DOAP06340 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.45■■□□□ 1.18
HLA-DOAP06340 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC22.45■■□□□ 1.18
HLA-DOAP06340 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
HLA-DOAP06340 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms