Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC25.81■■□□□ 1.72
MSH5O43196 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC25.81■■□□□ 1.72
MSH5O43196 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC25.81■■□□□ 1.72
MSH5O43196 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
MSH5O43196 AC010947.1-201ENST00000623454 693 ntBASIC25.81■■□□□ 1.72
MSH5O43196 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC25.81■■□□□ 1.72
MSH5O43196 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC25.81■■□□□ 1.72
MSH5O43196 AC099778.1-201ENST00000568593 1911 ntBASIC25.8■■□□□ 1.72
MSH5O43196 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 AC240504.1-201ENST00000395709 845 ntBASIC25.8■■□□□ 1.72
MSH5O43196 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC25.8■■□□□ 1.72
MSH5O43196 SETP8-201ENST00000435341 628 ntBASIC25.8■■□□□ 1.72
MSH5O43196 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC25.8■■□□□ 1.72
MSH5O43196 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 WWOX-216ENST00000569818 525 ntBASIC25.8■■□□□ 1.72
MSH5O43196 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC25.8■■□□□ 1.72
MSH5O43196 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
MSH5O43196 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
MSH5O43196 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 AC073508.3-201ENST00000619697 1419 ntBASIC25.8■■□□□ 1.72
MSH5O43196 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
MSH5O43196 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC25.79■■□□□ 1.72
MSH5O43196 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC25.79■■□□□ 1.72
MSH5O43196 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC25.79■■□□□ 1.72
MSH5O43196 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH5O43196 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC25.79■■□□□ 1.72
MSH5O43196 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC25.79■■□□□ 1.72
MSH5O43196 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.79■■□□□ 1.72
MSH5O43196 AL353708.1-201ENST00000567904 1257 ntBASIC25.79■■□□□ 1.72
MSH5O43196 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH5O43196 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
MSH5O43196 DET1-207ENST00000564406 2315 ntTSL 2 BASIC25.79■■□□□ 1.72
MSH5O43196 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC25.78■■□□□ 1.72
MSH5O43196 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC25.78■■□□□ 1.72
MSH5O43196 APOBEC3H-202ENST00000401756 1023 ntAPPRIS ALT2 TSL 3 BASIC25.78■■□□□ 1.72
MSH5O43196 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC25.78■■□□□ 1.72
MSH5O43196 TSPAN5-202ENST00000505184 1191 ntTSL 2 BASIC25.78■■□□□ 1.72
MSH5O43196 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC25.78■■□□□ 1.72
MSH5O43196 AC108673.2-201ENST00000608909 565 ntBASIC25.78■■□□□ 1.72
MSH5O43196 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC25.78■■□□□ 1.72
MSH5O43196 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
MSH5O43196 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
MSH5O43196 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 AC020907.5-201ENST00000624372 1936 ntBASIC25.77■■□□□ 1.72
MSH5O43196 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC25.77■■□□□ 1.72
MSH5O43196 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC25.77■■□□□ 1.72
MSH5O43196 MTND1P8-201ENST00000571424 950 ntBASIC25.77■■□□□ 1.72
MSH5O43196 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
MSH5O43196 AC004264.1-201ENST00000608354 794 ntBASIC25.77■■□□□ 1.72
MSH5O43196 CR392000.1-201ENST00000624770 1228 ntBASIC25.77■■□□□ 1.72
MSH5O43196 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.77■■□□□ 1.72
MSH5O43196 LTB4R2-202ENST00000528054 3092 ntBASIC25.77■■□□□ 1.72
MSH5O43196 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC25.77■■□□□ 1.72
MSH5O43196 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
MSH5O43196 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC25.77■■□□□ 1.72
MSH5O43196 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC25.77■■□□□ 1.72
MSH5O43196 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms