Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
CCDC9Q9Y3X0 RNU1-108P-201ENST00000362556 161 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-552P-201ENST00000362869 119 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 RNA5SP38-201ENST00000410750 119 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 MTCYBP5-201ENST00000423752 1135 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 SETP5-201ENST00000437270 562 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AC012181.1-201ENST00000479895 423 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AC106707.2-201ENST00000484182 374 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 RPL23AP94-201ENST00000512518 302 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-928P-201ENST00000516876 104 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-1315P-201ENST00000517187 99 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 RN7SKP57-201ENST00000517248 293 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AMZ2P1-203ENST00000565833 850 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 MIR4474-201ENST00000579189 78 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 YWHAEP7-203ENST00000622054 312 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 DHX9P1-201ENST00000436565 3076 ntBASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
CCDC9Q9Y3X0 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 FTLP6-201ENST00000355274 422 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AMD1P2-201ENST00000412936 992 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AL139247.1-201ENST00000422768 325 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AL118520.1-201ENST00000450770 291 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC092989.1-201ENST00000481235 277 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 PCBP2P3-201ENST00000509726 843 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 RNU6-835P-201ENST00000516974 104 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AP005435.4-201ENST00000529514 284 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC091516.1-201ENST00000549191 703 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 HIGD1AP1-201ENST00000550979 275 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 RPL23AP97-201ENST00000568955 471 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AL138880.2-201ENST00000616214 239 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 PLCE1P1-201ENST00000622094 305 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 AC005086.4-201ENST00000623065 213 ntBASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 FER-210ENST00000628534 558 ntTSL 5 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC5.34□□□□□ -1.55
CCDC9Q9Y3X0 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
CCDC9Q9Y3X0 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 RNU1-44P-201ENST00000384453 163 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 RNU6-903P-201ENST00000391270 109 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AL139039.1-201ENST00000401900 692 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 MIR1277-201ENST00000408536 78 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AC096664.2-201ENST00000411843 406 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AL358472.1-201ENST00000431295 329 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AP001486.1-201ENST00000463339 476 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AL049873.1-201ENST00000480540 376 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 RNA5SP401-201ENST00000515920 127 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AC090136.1-201ENST00000520009 240 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 HIF1AP1-201ENST00000553642 175 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 MEG8-215ENST00000555354 469 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 IGKV2OR2-8-201ENST00000558710 300 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 BNIP3P30-201ENST00000601184 574 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 MIR432-201ENST00000606207 94 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 FTX_3.1-201ENST00000610451 147 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AC024940.5-201ENST00000622889 474 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 AC099506.2-201ENST00000623074 221 ntBASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
CCDC9Q9Y3X0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC9Q9Y3X0 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 142.7 ms