Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 SNURFL-201ENST00000309296 343 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 SNORD115-32-201ENST00000364079 82 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 RNU6-968P-201ENST00000384076 107 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 RNU6-1181P-201ENST00000384191 106 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 RNU6-72P-201ENST00000384285 79 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 RNU2-20P-201ENST00000410425 191 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 COX6B1P1-201ENST00000415962 213 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 TMSB10P2-201ENST00000416049 131 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 EIF1AXP1-201ENST00000419267 435 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 TMEM183AP1-205ENST00000432739 290 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AC009296.1-201ENST00000443146 155 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 PPP1R11P1-201ENST00000486095 376 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 RN7SKP272-201ENST00000516988 232 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 MDM2-232ENST00000544561 213 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AC120057.2-201ENST00000571520 271 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AC010620.2-201ENST00000600135 313 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AC131238.1-201ENST00000617135 328 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 AP000432.2-201ENST00000624164 2048 ntBASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.56□□□□□ -1.52
LIMD1Q9UGP4 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AL360270.2-201ENST00000562952 5985 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 RNA5SP326-201ENST00000363209 110 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 RNVU1-6-201ENST00000364688 164 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 Y_RNA.504-201ENST00000384481 104 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 MIR105-1-201ENST00000385222 81 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC017079.2-201ENST00000416102 485 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 MTCO1P5-201ENST00000433573 344 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 TMSB4XP3-201ENST00000445144 114 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 HSPE1P25-201ENST00000455484 251 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 KC877373.1-201ENST00000479066 408 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 MRPL42P6-201ENST00000486397 371 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AL132838.2-201ENST00000492041 314 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC139453.3-201ENST00000493276 369 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC107393.1-201ENST00000512403 346 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 OR7H2P-201ENST00000513483 306 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC053481.4-201ENST00000583164 216 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AL713866.2-201ENST00000603579 219 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC087385.3-201ENST00000620477 187 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 MIR6715B-201ENST00000637172 77 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC005005.4-201ENST00000623789 16698 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 AC007390.2-201ENST00000606229 3803 ntBASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
LIMD1Q9UGP4 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 ZNF826P-207ENST00000622273 1910 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 RNU6-105P-201ENST00000363909 104 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 RNU1-32P-201ENST00000363937 159 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 Y_RNA.506-201ENST00000384494 102 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 RAB9AP3-201ENST00000412737 573 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 AL590139.1-201ENST00000416267 400 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 RNF10P1-201ENST00000418589 369 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 AC011753.3-201ENST00000443436 406 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 AC016700.2-201ENST00000446011 156 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 RAB9AP1-201ENST00000449393 573 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 SNRPCP3-201ENST00000474888 476 ntBASIC5.54□□□□□ -1.52
LIMD1Q9UGP4 RNU2-31P-201ENST00000516954 155 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 162.6 ms