Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 RPL21P65-201ENST00000406094 466 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 MIR1290-201ENST00000408735 78 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 AL929472.1-201ENST00000417484 429 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 RPL37P4-201ENST00000448908 268 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 SNORD65B-201ENST00000459126 73 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 RN7SL834P-201ENST00000461450 286 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 AC092754.1-201ENST00000472975 479 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 MIR3683-201ENST00000580847 82 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 MIR4439-201ENST00000583746 80 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 LINC02495-203ENST00000636704 242 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 U2.21-201ENST00000637295 81 ntBASIC9.37□□□□□ -0.91
SENP3Q9H4L4 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
SENP3Q9H4L4 JAZF1-201ENST00000283928 3125 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AC073136.1-201ENST00000449426 2884 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 MIR585-201ENST00000384887 94 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AL035398.1-201ENST00000430869 322 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 RN7SL870P-201ENST00000460111 296 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AC098847.1-201ENST00000473094 348 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 RN7SL273P-201ENST00000481561 299 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 RPS4XP23-201ENST00000487801 237 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 RPS23P1-201ENST00000491662 432 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 IGLV2-28-201ENST00000520681 304 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AC024884.1-201ENST00000620583 399 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 MAPK10-365ENST00000641902 3825 ntBASIC9.36□□□□□ -0.91
SENP3Q9H4L4 SYNE2-216ENST00000555002 11532 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 PHLDB2-202ENST00000393925 5543 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AOAH-210ENST00000617267 2398 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 LINC02547-201ENST00000531559 3308 ntTSL 2 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC9.36□□□□□ -0.91
SENP3Q9H4L4 AC027575.3-201ENST00000583058 2747 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 OR2T35-202ENST00000641268 2957 ntAPPRIS P1 BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 ZNF268-201ENST00000228289 3543 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 RNU6-778P-201ENST00000363269 103 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 RNU4-32P-201ENST00000363404 141 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 MIR519C-201ENST00000385053 87 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 RNU2-50P-201ENST00000410494 143 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 RPL23AP63-201ENST00000498752 471 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 AC087575.1-201ENST00000585087 229 ntBASIC9.35□□□□□ -0.91
SENP3Q9H4L4 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 CROT-204ENST00000442291 1993 ntTSL 5 BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 AC106038.1-201ENST00000501194 3473 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
SENP3Q9H4L4 AC093278.2-201ENST00000564956 2485 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 NOL8P1-201ENST00000508336 3529 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 Y_RNA.57-201ENST00000362806 113 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 SNORA51.9-201ENST00000384295 124 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 MIR586-201ENST00000385035 97 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 RN7SKP281-201ENST00000410472 352 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 AL591419.1-201ENST00000427423 339 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 AC007225.2-201ENST00000562529 256 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 AC091979.2-201ENST00000607514 214 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 RNU6-91P-201ENST00000607774 107 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 MIR7854-201ENST00000620068 65 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 AC005336.3-201ENST00000623833 2679 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 SMG1P5-202ENST00000529428 4219 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 SMG1P2-201ENST00000566127 4221 ntBASIC9.34□□□□□ -0.91
SENP3Q9H4L4 HLF-210ENST00000575345 3589 ntTSL 2 BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC9.34□□□□□ -0.91
SENP3Q9H4L4 IGF1R-206ENST00000558762 11726 ntAPPRIS ALT1 TSL 1 (best) BASIC9.34□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 93.3 ms