Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6-953P-201ENST00000459154 107 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RPL9P32-201ENST00000464118 620 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RPS23P3-201ENST00000470993 430 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RPL36AP51-201ENST00000487216 318 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 SCARNA15.2-201ENST00000516409 127 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RNU6-677P-201ENST00000516914 101 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 NRON-201ENST00000517270 370 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.16□□□□□ -1.74
NUP88Q99567 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC4.16□□□□□ -1.74
NUP88Q99567 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.16□□□□□ -1.74
NUP88Q99567 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.16□□□□□ -1.74
NUP88Q99567 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC4.16□□□□□ -1.74
NUP88Q99567 CBX3P5-201ENST00000552017 521 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 RPS3AP4-201ENST00000555161 764 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC4.16□□□□□ -1.74
NUP88Q99567 SNORA59B-202ENST00000578183 701 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC006504.3-201ENST00000586818 523 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC4.16□□□□□ -1.74
NUP88Q99567 AL162413.1-201ENST00000603198 110 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC104763.2-201ENST00000604179 382 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC006077.1-201ENST00000604746 343 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 uc_338.32-201ENST00000615087 172 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
NUP88Q99567 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC4.16□□□□□ -1.74
NUP88Q99567 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
NUP88Q99567 MTND5P17-201ENST00000418405 1603 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC116096.1-201ENST00000566804 2314 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AC008568.2-201ENST00000623862 2313 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 AL137003.2-201ENST00000606924 2538 ntBASIC4.16□□□□□ -1.74
NUP88Q99567 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.16□□□□□ -1.74
NUP88Q99567 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
NUP88Q99567 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC4.15□□□□□ -1.74
NUP88Q99567 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC4.15□□□□□ -1.74
NUP88Q99567 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
NUP88Q99567 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.15□□□□□ -1.74
NUP88Q99567 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
NUP88Q99567 Y_RNA.256-201ENST00000364594 104 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 RNU6-877P-201ENST00000383868 107 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 RNU6-1158P-201ENST00000391167 107 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC4.15□□□□□ -1.75
NUP88Q99567 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.15□□□□□ -1.75
NUP88Q99567 AC007919.1-201ENST00000429380 217 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.15□□□□□ -1.75
NUP88Q99567 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.15□□□□□ -1.75
NUP88Q99567 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.15□□□□□ -1.75
NUP88Q99567 MTND1P18-201ENST00000448191 573 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 RBMY2UP-201ENST00000453474 324 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.15□□□□□ -1.75
NUP88Q99567 MTCO3P38-201ENST00000468910 766 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AC083798.1-201ENST00000472671 131 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC4.15□□□□□ -1.75
NUP88Q99567 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC4.15□□□□□ -1.75
NUP88Q99567 RN7SKP60-201ENST00000516985 239 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC4.15□□□□□ -1.75
NUP88Q99567 OR5B19P-201ENST00000531766 928 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AHI1-217ENST00000534469 680 ntTSL 3 BASIC4.15□□□□□ -1.75
NUP88Q99567 AC092747.1-201ENST00000538920 351 ntTSL 5 BASIC4.15□□□□□ -1.75
NUP88Q99567 AL121576.1-201ENST00000556055 276 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AP005205.1-201ENST00000563503 508 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 MIR3200-201ENST00000580767 85 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AC067852.3-201ENST00000589177 561 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 AP000907.4-201ENST00000604143 237 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 MIR1321-201ENST00000637766 79 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 API5P2-201ENST00000397055 1498 ntBASIC4.15□□□□□ -1.75
NUP88Q99567 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC4.15□□□□□ -1.75
NUP88Q99567 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
NUP88Q99567 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.14□□□□□ -1.75
NUP88Q99567 CEP170P1-201ENST00000502249 4587 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 MIR423-201ENST00000362201 94 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 RNU6-996P-201ENST00000365438 107 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 SNORA9-201ENST00000384215 133 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 HSPE1P26-201ENST00000405341 275 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.14□□□□□ -1.75
NUP88Q99567 SEPT14P3-201ENST00000439401 183 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AL732372.2-207ENST00000445840 183 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC4.14□□□□□ -1.75
NUP88Q99567 SEPT14P2-201ENST00000453405 183 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AC233702.1-201ENST00000482905 502 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 SEPT14P4-201ENST00000513445 186 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 FO082796.1-201ENST00000523795 183 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 RANP3-201ENST00000530970 276 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC4.14□□□□□ -1.75
NUP88Q99567 AC234778.2-201ENST00000566241 354 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AC008752.3-201ENST00000588113 712 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC4.14□□□□□ -1.75
NUP88Q99567 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.14□□□□□ -1.75
NUP88Q99567 AC091953.5-201ENST00000622919 233 ntBASIC4.14□□□□□ -1.75
NUP88Q99567 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.14□□□□□ -1.75
NUP88Q99567 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC4.14□□□□□ -1.75
NUP88Q99567 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
NUP88Q99567 AF117829.1-206ENST00000621883 3802 ntBASIC4.13□□□□□ -1.75
NUP88Q99567 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
NUP88Q99567 AC008725.1-201ENST00000605123 2263 ntBASIC4.13□□□□□ -1.75
NUP88Q99567 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 116.6 ms