Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 U1.1-201ENST00000384101 164 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 Y_RNA.529-201ENST00000384586 119 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 Y_RNA.530-201ENST00000384587 101 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 UBE2V1P2-201ENST00000397758 440 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 HSPE1P8-201ENST00000406997 288 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 SNORA11-201ENST00000408789 128 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL513331.1-201ENST00000411908 397 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 PDCL2P1-201ENST00000419302 352 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL645937.1-202ENST00000421799 937 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 ACBD3-AS1-201ENST00000440540 535 ntTSL 5 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL500522.2-201ENST00000448562 343 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 SCARNA18-201ENST00000459004 134 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC004801.2-202ENST00000463559 283 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 Y_RNA.654-201ENST00000497848 106 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 FGF7P4-201ENST00000509595 295 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 SNORA31.3-201ENST00000516029 96 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 Y_RNA.675-201ENST00000516389 149 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC011611.1-201ENST00000552179 197 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC005951.2-201ENST00000576282 495 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 MIR3921-201ENST00000577308 85 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AL606490.9-201ENST00000603331 271 ntBASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CTHRC1Q96CG8 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU4-73P-201ENST00000363164 141 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU6-288P-201ENST00000363690 104 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNA5SP97-201ENST00000365006 84 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNA5SP167-201ENST00000365461 116 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU6-1013P-201ENST00000384180 107 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU6-14P-201ENST00000384630 106 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 HLFP1-201ENST00000402375 499 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AL356432.1-201ENST00000405809 419 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 MIR1290-201ENST00000408735 78 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RN7SKP177-201ENST00000410567 355 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC007390.1-201ENST00000415722 356 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AL451054.2-201ENST00000420896 202 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AL353678.1-201ENST00000422735 741 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AL591212.2-201ENST00000433923 257 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC104058.1-201ENST00000448028 297 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC092001.1-201ENST00000453012 261 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 SNRPGP5-201ENST00000456003 220 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AMD1P1-201ENST00000457220 922 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AP000873.1-201ENST00000463987 400 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC084198.1-201ENST00000477747 402 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC069499.1-201ENST00000489433 509 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AL049874.1-201ENST00000489560 388 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 TTC39CP1-201ENST00000512513 755 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU4-49P-201ENST00000516080 140 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 Y_RNA.665-201ENST00000516177 98 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU6-927P-201ENST00000516199 100 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU6-1038P-201ENST00000516516 104 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RNU6-1073P-201ENST00000517182 106 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 RPL7P20-201ENST00000520308 745 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 GLYCAM1-201ENST00000546596 285 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 MED28P6-201ENST00000558776 231 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC005498.1-201ENST00000592125 465 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AL022345.1-201ENST00000607292 135 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC092807.2-201ENST00000609367 243 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 AC103858.2-201ENST00000621471 543 ntBASIC3.59□□□□□ -1.83
CTHRC1Q96CG8 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.59□□□□□ -1.84
CTHRC1Q96CG8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CTHRC1Q96CG8 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CTHRC1Q96CG8 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.59□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms