Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC1.89□□□□□ -2.11
LMX1AQ8TE12 AP003399.1-201ENST00000637534 361 ntBASIC1.89□□□□□ -2.11
LMX1AQ8TE12 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 RNU1-17P-201ENST00000363022 152 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 Y_RNA.140-201ENST00000363474 103 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 RNA5SP160-201ENST00000364866 120 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 MIR524-201ENST00000385242 87 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 RNU2-43P-201ENST00000410306 190 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC003989.2-201ENST00000440224 169 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 MTND2P20-201ENST00000440805 661 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL592447.1-201ENST00000447592 540 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 MTND4LP3-201ENST00000468320 276 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC104564.1-201ENST00000493028 407 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC113420.1-201ENST00000507903 571 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 LINC02144-201ENST00000511417 592 ntTSL 4 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 SNORA31.22-201ENST00000517204 135 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 IGLV3-17-201ENST00000519099 244 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC087808.1-201ENST00000520501 361 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 NDUFS5P6-201ENST00000529136 295 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC087894.1-201ENST00000538359 518 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC090888.1-201ENST00000561335 1141 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 OR4K8P-201ENST00000578842 1048 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 OR4K7P-201ENST00000580232 945 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC002984.1-201ENST00000591692 448 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL356280.1-201ENST00000603614 379 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL031176.1-201ENST00000604554 466 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC004853.1-201ENST00000604902 698 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AL391813.2-201ENST00000609113 322 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC079395.3-201ENST00000615161 484 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC090132.2-201ENST00000615881 347 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AC079597.1-201ENST00000624306 508 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AP003485.1-201ENST00000625093 753 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 MIR203B-201ENST00000636080 86 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 MIR1322-201ENST00000638013 71 ntBASIC1.88□□□□□ -2.11
LMX1AQ8TE12 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
LMX1AQ8TE12 AP005901.5-201ENST00000545779 1796 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 RNA5SP213-201ENST00000391031 106 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 HMGB1P17-201ENST00000403495 628 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 RNU4ATAC16P-201ENST00000408512 126 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AL022578.1-201ENST00000439330 1433 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC009296.1-201ENST00000443146 155 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 MTCYBP3-201ENST00000445588 1137 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AL031659.1-201ENST00000447075 539 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC005297.2-201ENST00000450430 606 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AL021397.1-201ENST00000451806 248 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AL135752.1-201ENST00000479477 471 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 TMEM251P1-201ENST00000503717 318 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 RNU6-1028P-201ENST00000517164 93 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 FAM92A1P1-201ENST00000528023 890 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 HIGD1AP17-201ENST00000554576 276 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 TRAV28-201ENST00000557548 323 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 MIR3912-201ENST00000577566 105 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 MIR5708-201ENST00000579723 85 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 MIR3117-201ENST00000584034 78 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC005498.1-201ENST00000592125 465 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 DUXAP11-201ENST00000603858 526 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AL121917.1-203ENST00000605534 577 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 AC069545.1-201ENST00000605671 358 ntBASIC1.87□□□□□ -2.11
LMX1AQ8TE12 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.87□□□□□ -2.11
LMX1AQ8TE12 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 RNU6-1072P-201ENST00000384703 107 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 RNU6-443P-201ENST00000384780 107 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 DHFRP6-201ENST00000401776 268 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AC019178.2-201ENST00000423595 505 ntBASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.86□□□□□ -2.11
LMX1AQ8TE12 AL590383.1-201ENST00000428602 75 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms