Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.8□□□□□ -1.8
CLRN3Q8NCR9 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RNU6-1188P-201ENST00000363795 107 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 Z98941.1-201ENST00000407764 100 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 SNORA11B-201ENST00000408175 129 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RN7SKP167-201ENST00000411047 285 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC099548.1-201ENST00000421443 426 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AF228730.4-201ENST00000421457 183 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 FGF12-202ENST00000430714 603 ntTSL 2 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AL031274.1-201ENST00000450334 232 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AP006222.1-205ENST00000450734 457 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 BTF3P15-201ENST00000455606 336 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RNU7-152P-201ENST00000458982 64 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 OR2A1-AS1-202ENST00000467944 422 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RPSAP50-201ENST00000481955 852 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC002456.2-201ENST00000509356 380 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.708-201ENST00000516950 96 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AL163153.1-201ENST00000554223 283 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 CYCSP39-201ENST00000565821 309 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC006116.3-201ENST00000592968 361 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC068790.4-201ENST00000602474 263 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 CYP2C61P-201ENST00000604072 290 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AL499605.1-201ENST00000604628 403 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 HSPE1P7-201ENST00000604681 321 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC124303.1-201ENST00000605703 360 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 MIR6778-201ENST00000617912 73 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 AC007742.2-201ENST00000618226 398 ntBASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.79□□□□□ -1.8
CLRN3Q8NCR9 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RNU6-72P-201ENST00000384285 79 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 U3.37-201ENST00000408528 213 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RNA5SP31-201ENST00000411144 127 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RHEBP3-201ENST00000411920 351 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 Z99755.1-201ENST00000414048 380 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RPL34P3-201ENST00000421454 338 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC093151.1-201ENST00000427711 313 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL159987.2-201ENST00000432754 307 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 HIGD1AP11-201ENST00000438361 280 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RPS29P10-201ENST00000439197 166 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 CEACAMP4-201ENST00000457676 421 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RNU6-1037P-201ENST00000459571 107 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RN7SL443P-201ENST00000464331 290 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 RPL23AP45-201ENST00000476406 468 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 OARD1-211ENST00000480585 829 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.687-201ENST00000516558 91 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 Y_RNA.719-201ENST00000517156 106 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 CBX3P7-201ENST00000532876 502 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL121821.2-201ENST00000556081 394 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC015912.2-201ENST00000571053 181 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC234771.5-201ENST00000600161 514 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL161729.3-201ENST00000603533 673 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC087783.2-201ENST00000605070 562 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC018462.2-201ENST00000605375 395 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC019193.3-201ENST00000609144 554 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC064836.2-201ENST00000609491 462 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL591516.1-201ENST00000611326 274 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL157817.1-201ENST00000614264 790 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AL161629.2-201ENST00000615347 275 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 AC068831.7-201ENST00000616954 363 ntBASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CLRN3Q8NCR9 5S_rRNA.28-201ENST00000638107 119 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms