Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RNU6-1027P-201ENST00000383998 107 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 MIR514A1-201ENST00000385133 98 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AL031121.1-201ENST00000406553 254 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 RN7SKP140-201ENST00000411196 284 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 HMGB3P20-201ENST00000417997 600 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 NBDY-202ENST00000423617 543 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC093156.1-201ENST00000440382 670 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 TXNP1-201ENST00000441872 371 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC079448.1-201ENST00000449377 373 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AP002884.2-201ENST00000471647 395 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 KCTD9P5-201ENST00000504141 1170 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 HMGB1P41-201ENST00000520234 440 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AP006245.1-201ENST00000522549 120 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC093012.1-202ENST00000549403 582 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC012493.2-201ENST00000595083 291 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC103710.2-201ENST00000609912 942 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 SNHG22-203ENST00000617833 660 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC138649.3-201ENST00000622154 254 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC110801.1-201ENST00000623590 212 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC098679.4-201ENST00000624241 654 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC006386.2-201ENST00000624491 75 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 AC012005.1-201ENST00000624575 75 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 SRP54-214ENST00000630962 162 ntTSL 5 BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 FAM35CP-201ENST00000554755 2470 ntBASIC2.97□□□□□ -1.93
PDLIM3Q53GG5 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.93
PDLIM3Q53GG5 ANKRD26P2-201ENST00000445530 1710 ntBASIC2.96□□□□□ -1.93
PDLIM3Q53GG5 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 RNU6-799P-201ENST00000363567 107 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 Y_RNA.296-201ENST00000364930 108 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL136116.1-201ENST00000403591 381 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 OOSP1P1-201ENST00000423265 274 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL591419.1-201ENST00000427423 339 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC007919.1-201ENST00000429380 217 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL158071.1-201ENST00000430315 461 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 RPL23AP30-201ENST00000432419 501 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL451074.3-201ENST00000437709 472 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 RPS24P1-201ENST00000438550 371 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 GAPDHP27-201ENST00000447427 1020 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 MTND1P12-201ENST00000455231 147 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL133162.1-201ENST00000463228 453 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 KC877373.1-201ENST00000479066 408 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 PHBP14-201ENST00000512887 367 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 RNU6-237P-201ENST00000515985 71 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC087883.1-201ENST00000551882 391 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 NCAPGP2-201ENST00000557911 754 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 TGIF1P1-201ENST00000558095 802 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AL391840.1-201ENST00000571144 367 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC245014.2-201ENST00000603689 287 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 AC246785.4-201ENST00000605374 287 ntBASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
PDLIM3Q53GG5 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 Y_RNA.41-201ENST00000362646 102 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 U3.11-201ENST00000364476 212 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 RNU5A-6P-201ENST00000384136 116 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 RNU6-456P-201ENST00000384493 107 ntBASIC2.95□□□□□ -1.94
PDLIM3Q53GG5 MIR490-201ENST00000384865 128 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 125.7 ms