Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CHD9Q3L8U1 AL356057.2-201ENST00000403318 432 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 Z75741.2-201ENST00000417272 1167 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 AL109933.3-201ENST00000619095 188 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 AC015726.3-201ENST00000624501 418 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 RNU6-1251P-201ENST00000364502 107 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 NUCB2-202ENST00000458064 1279 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
CHD9Q3L8U1 OSBPL9P3-201ENST00000534523 595 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 MIR3122-201ENST00000577243 73 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 AC084373.1-201ENST00000603311 235 ntBASIC0.93□□□□□ -2.26
CHD9Q3L8U1 RNU1-62P-201ENST00000362599 164 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 SNORD14B-201ENST00000364533 90 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC0.92□□□□□ -2.26
CHD9Q3L8U1 RNU6-17P-201ENST00000384245 107 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 RNU6-18P-201ENST00000384527 107 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD9Q3L8U1 MTND4P11-201ENST00000417020 1058 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 HMGN2P30-201ENST00000423237 256 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC0.92□□□□□ -2.26
CHD9Q3L8U1 MTCO1P47-201ENST00000523889 1271 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 HSPE1P20-201ENST00000538133 289 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC0.92□□□□□ -2.26
CHD9Q3L8U1 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 SNORA6-201ENST00000384033 151 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 MIR493-201ENST00000385254 89 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 RNU2-40P-201ENST00000410833 196 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 CST2P1-201ENST00000425770 87 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 OR4R1P-201ENST00000529879 463 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 AL136363.1-201ENST00000605349 337 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC0.92□□□□□ -2.26
CHD9Q3L8U1 AC068831.7-201ENST00000616954 363 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 MIR6864-201ENST00000617935 70 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 AC020923.1-201ENST00000624021 917 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 MIR924-201ENST00000638017 53 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 ZNF519P1-201ENST00000449011 1626 ntBASIC0.92□□□□□ -2.26
CHD9Q3L8U1 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 OR51AB1P-201ENST00000429046 620 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 Z77249.1-201ENST00000444622 1175 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 RPL31P20-201ENST00000449593 360 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 RPS23P3-201ENST00000470993 430 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 RNU6-1073P-201ENST00000517182 106 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC055764.2-201ENST00000610089 670 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 SNORD65-201ENST00000391079 73 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 RPL17P49-201ENST00000443728 411 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC108120.2-201ENST00000512973 294 ntBASIC0.91□□□□□ -2.26
CHD9Q3L8U1 LIAS-206ENST00000513731 826 ntTSL 5 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC0.91□□□□□ -2.26
CHD9Q3L8U1 RNU6-234P-201ENST00000365229 104 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 ANAPC10P1-201ENST00000395991 556 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 MIR936-201ENST00000401264 98 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 BX682237.1-201ENST00000415016 335 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 AC099677.1-201ENST00000420575 175 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 MTND4P31-201ENST00000425607 1343 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 RPL21P66-201ENST00000426566 466 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 IFNA20P-201ENST00000436840 528 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 JTBP1-201ENST00000441314 247 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 AC096751.1-202ENST00000502691 1067 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 SNRPGP16-201ENST00000533275 226 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
CHD9Q3L8U1 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC0.9□□□□□ -2.26
CHD9Q3L8U1 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC0.9□□□□□ -2.26
CHD9Q3L8U1 RPS15AP11-201ENST00000594193 385 ntBASIC0.9□□□□□ -2.26
CHD9Q3L8U1 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
CHD9Q3L8U1 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 RNU6-115P-201ENST00000364310 107 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC005908.1-201ENST00000468701 347 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 NCOR1P1-202ENST00000486162 291 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC133963.2-201ENST00000513686 578 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 SNORA31.23-201ENST00000517219 133 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC008676.3-201ENST00000521237 435 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 MTCYBP41-201ENST00000528913 1123 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 CENPUP2-201ENST00000555897 1186 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
CHD9Q3L8U1 RNA5SP391-201ENST00000363456 119 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 SNORA14A-201ENST00000364773 135 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 RNU6-997P-201ENST00000384725 107 ntBASIC0.9□□□□□ -2.27
CHD9Q3L8U1 MIR144-201ENST00000384886 86 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms