Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC1.74□□□□□ -2.13
FOXF1Q12946 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXF1Q12946 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
FOXF1Q12946 AC027807.1-201ENST00000559921 996 ntBASIC1.74□□□□□ -2.13
FOXF1Q12946 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXF1Q12946 AC009127.3-201ENST00000570531 403 ntBASIC1.74□□□□□ -2.13
FOXF1Q12946 MIR3935-201ENST00000583472 104 ntBASIC1.74□□□□□ -2.13
FOXF1Q12946 AL022067.1-201ENST00000602426 454 ntBASIC1.74□□□□□ -2.13
FOXF1Q12946 AL357080.1-201ENST00000617394 239 ntBASIC1.74□□□□□ -2.13
FOXF1Q12946 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC1.74□□□□□ -2.13
FOXF1Q12946 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.74□□□□□ -2.13
FOXF1Q12946 ZNF355P-201ENST00000427301 3216 ntBASIC1.74□□□□□ -2.13
FOXF1Q12946 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC1.74□□□□□ -2.13
FOXF1Q12946 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.74□□□□□ -2.13
FOXF1Q12946 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.73□□□□□ -2.13
FOXF1Q12946 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
FOXF1Q12946 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.73□□□□□ -2.13
FOXF1Q12946 KPNA2P1-201ENST00000458289 1591 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
FOXF1Q12946 snoZ40.1-201ENST00000364540 72 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 RPL17P12-201ENST00000413391 526 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 MRPS36P1-201ENST00000421291 307 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXF1Q12946 HMGB3P12-201ENST00000438745 556 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AL714022.1-201ENST00000439897 151 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AC116337.2-201ENST00000477662 156 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC068587.2-201ENST00000478386 781 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 TMEM251P1-201ENST00000503717 318 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC109464.2-201ENST00000510242 943 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 RNU6-1282P-201ENST00000516735 96 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC084706.1-201ENST00000521879 558 ntTSL 2 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AC010546.1-201ENST00000569391 485 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC090615.1-201ENST00000577519 154 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC243773.3-201ENST00000613270 256 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC245884.12-201ENST00000615364 59 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 UCA1.1-201ENST00000620952 75 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC104985.3-201ENST00000623479 597 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC090772.4-201ENST00000623599 362 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 AC073308.1-201ENST00000623696 305 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AP003399.1-201ENST00000637534 361 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 OR5H6-203ENST00000642105 978 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
FOXF1Q12946 AL137003.2-201ENST00000606924 2538 ntBASIC1.73□□□□□ -2.13
FOXF1Q12946 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC1.73□□□□□ -2.13
FOXF1Q12946 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
FOXF1Q12946 AL079343.1-201ENST00000572358 1771 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
FOXF1Q12946 RNU6-359P-201ENST00000365466 108 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 RNU6-76P-201ENST00000384060 104 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 SNORA40.2-201ENST00000390847 128 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 SNRPEP2-201ENST00000397592 279 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 RPS3AP24-201ENST00000407896 734 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AL030996.1-201ENST00000411430 235 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AC098614.2-201ENST00000426040 255 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 OR4K11P-201ENST00000431829 904 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXF1Q12946 SDCBPP1-201ENST00000440192 890 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC005297.2-201ENST00000450430 606 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 UBL5P3-201ENST00000475112 231 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC022493.1-201ENST00000492984 337 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 HMGB1P28-201ENST00000507778 552 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 LINC02428-201ENST00000508099 527 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AC113347.3-201ENST00000509113 148 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AC006499.2-201ENST00000513470 337 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC093677.1-201ENST00000514414 678 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AC022861.1-201ENST00000522981 663 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AC104072.1-201ENST00000568817 668 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC1.72□□□□□ -2.13
FOXF1Q12946 MIR3616-201ENST00000584070 92 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC005498.1-201ENST00000592125 465 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC112220.2-201ENST00000605513 533 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC090132.2-201ENST00000615881 347 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC084824.4-201ENST00000620106 731 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AL445264.1-201ENST00000621719 171 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 DUXAP9-208ENST00000622815 614 ntBASIC1.72□□□□□ -2.13
FOXF1Q12946 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXF1Q12946 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC1.72□□□□□ -2.13
FOXF1Q12946 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
FOXF1Q12946 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.72□□□□□ -2.13
FOXF1Q12946 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
FOXF1Q12946 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
FOXF1Q12946 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
FOXF1Q12946 RNU6-270P-201ENST00000364131 105 ntBASIC1.71□□□□□ -2.14
FOXF1Q12946 Y_RNA.578-201ENST00000390903 88 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms