Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 LINC01399-202ENST00000458450 244 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 RN7SL98P-201ENST00000462271 300 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 AC109327.1-201ENST00000471666 403 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 AC010683.1-201ENST00000473673 378 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX4Q06945 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.81□□□□□ -1.64
SOX4Q06945 ACA59.1-201ENST00000515966 143 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 Y_RNA.687-201ENST00000516558 91 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 Y_RNA.700-201ENST00000516806 100 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 SNORA81.3-201ENST00000517283 198 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 TRAV8-5-201ENST00000537369 341 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC4.81□□□□□ -1.64
SOX4Q06945 AC068446.3-201ENST00000555285 382 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.81□□□□□ -1.64
SOX4Q06945 OR1M4P-201ENST00000589199 287 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 RPS29P30-201ENST00000600975 111 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 BPIFA4P-203ENST00000603168 689 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 MIR15A-201ENST00000607334 83 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 AL450472.3-201ENST00000615578 367 ntBASIC4.81□□□□□ -1.64
SOX4Q06945 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
SOX4Q06945 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
SOX4Q06945 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.8□□□□□ -1.64
SOX4Q06945 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 AC139769.1-204ENST00000472297 1931 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.8□□□□□ -1.64
SOX4Q06945 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 Y_RNA.416-201ENST00000384014 113 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SOX4Q06945 RNU6-817P-201ENST00000391083 104 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 CYCSP10-201ENST00000417973 294 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.8□□□□□ -1.64
SOX4Q06945 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.8□□□□□ -1.64
SOX4Q06945 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.8□□□□□ -1.64
SOX4Q06945 AC010618.1-201ENST00000469924 477 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 RN7SL810P-201ENST00000493031 276 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 MTND3P25-201ENST00000509243 135 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 RNA5SP446-201ENST00000515955 82 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 AC136624.4-201ENST00000573044 370 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 MIR3939-201ENST00000582614 106 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 AL390123.1-201ENST00000603216 237 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 MIR1244-1-201ENST00000612829 85 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 AC005344.1-201ENST00000613391 459 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 MIR1244-3-201ENST00000635744 85 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 MIR1244-2-201ENST00000636449 85 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 MIR1244-4-202ENST00000636813 85 ntBASIC4.8□□□□□ -1.64
SOX4Q06945 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.8□□□□□ -1.64
SOX4Q06945 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC4.8□□□□□ -1.64
SOX4Q06945 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.8□□□□□ -1.64
SOX4Q06945 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
SOX4Q06945 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
SOX4Q06945 Z95331.1-201ENST00000623075 23112 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC4.79□□□□□ -1.64
SOX4Q06945 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
SOX4Q06945 PCDH11X-204ENST00000373088 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 MAPK10-349ENST00000641767 3661 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 SMG1P4-204ENST00000523028 4131 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
SOX4Q06945 MIR331-201ENST00000362302 94 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 RNU6-212P-201ENST00000362642 104 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 Y_RNA.180-201ENST00000363867 113 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 SNORD27-201ENST00000363981 72 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 RNU6-338P-201ENST00000383888 105 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 HSPE1P8-201ENST00000406997 288 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 CTSL3P-202ENST00000412179 788 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 RPS15AP6-201ENST00000420703 385 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 PHBP16-201ENST00000446318 950 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 PTMAP3-201ENST00000447474 330 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 PPIAP21-201ENST00000464473 501 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 RPL7P5-201ENST00000471472 736 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 AC110792.1-201ENST00000491826 472 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 RNA5SP464-201ENST00000516251 108 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 RN7SKP258-201ENST00000517151 304 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 AC087369.1-201ENST00000520775 996 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.79□□□□□ -1.64
SOX4Q06945 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC4.79□□□□□ -1.64
SOX4Q06945 OR4H12P-201ENST00000556269 907 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.79□□□□□ -1.64
SOX4Q06945 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.79□□□□□ -1.64
SOX4Q06945 MIR3936-201ENST00000584304 110 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 AC009779.6-201ENST00000603972 165 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.79□□□□□ -1.64
SOX4Q06945 AC006023.2-201ENST00000609916 167 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 FTX_2.1-201ENST00000618816 94 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.79□□□□□ -1.64
SOX4Q06945 AL596275.2-204ENST00000641628 552 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 AL596275.2-206ENST00000641957 626 ntBASIC4.79□□□□□ -1.64
SOX4Q06945 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.79□□□□□ -1.64
SOX4Q06945 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.79□□□□□ -1.64
SOX4Q06945 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
SOX4Q06945 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms