Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
COL7A1Q02388 RPS6P14-201ENST00000425165 719 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 MTCO3P46-201ENST00000425787 232 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.68□□□□□ -2.3
COL7A1Q02388 AL035407.2-201ENST00000454090 378 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 RPS29P23-201ENST00000458635 123 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC067942.3-201ENST00000512025 362 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 SUB1P1-201ENST00000524415 382 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AP005597.4-201ENST00000526762 229 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 AC245884.12-201ENST00000615364 59 ntBASIC0.68□□□□□ -2.3
COL7A1Q02388 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC0.67□□□□□ -2.3
COL7A1Q02388 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC0.67□□□□□ -2.3
COL7A1Q02388 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
COL7A1Q02388 CASP3P1-201ENST00000446037 609 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 AL121769.1-201ENST00000469473 401 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 HMGN2P13-201ENST00000476476 274 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 AC096751.1-202ENST00000502691 1067 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC0.67□□□□□ -2.3
COL7A1Q02388 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC0.67□□□□□ -2.3
COL7A1Q02388 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.67□□□□□ -2.3
COL7A1Q02388 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC0.67□□□□□ -2.3
COL7A1Q02388 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC0.67□□□□□ -2.3
COL7A1Q02388 AC002550.2-201ENST00000621246 394 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 AC068620.4-201ENST00000636730 1182 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC0.67□□□□□ -2.3
COL7A1Q02388 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
COL7A1Q02388 RNU6-1235P-201ENST00000384559 107 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 Y_RNA.610-201ENST00000410681 103 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.67□□□□□ -2.3
COL7A1Q02388 AC022022.1-201ENST00000430304 178 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 RNU6-498P-201ENST00000459468 107 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 AC112198.4-201ENST00000515450 351 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 NDUFS5P6-201ENST00000529136 295 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 OR6C7P-201ENST00000547875 934 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 MTRNR2L2-201ENST00000604882 87 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 MIR6835-201ENST00000621552 64 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 AC132825.8-201ENST00000640783 297 ntBASIC0.67□□□□□ -2.3
COL7A1Q02388 AL390862.1-201ENST00000635467 1469 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
COL7A1Q02388 NACAP2-201ENST00000318548 624 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 RNU6-799P-201ENST00000363567 107 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 SNORA46.1-201ENST00000391069 153 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 SDCBPP1-201ENST00000440192 890 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 RPS26P56-201ENST00000444468 240 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 RPL21P104-201ENST00000464143 478 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 AC146507.1-201ENST00000468335 354 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 AC093852.1-201ENST00000503587 266 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC0.66□□□□□ -2.3
COL7A1Q02388 AL138976.2-201ENST00000563989 694 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 MZT1P2-201ENST00000604387 248 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 AC138473.1-201ENST00000605717 526 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC0.66□□□□□ -2.3
COL7A1Q02388 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.66□□□□□ -2.3
COL7A1Q02388 AC080100.1-201ENST00000624239 5356 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 Y_RNA.170-201ENST00000363746 110 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 RNU6-43P-201ENST00000384302 107 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 RNU6-16P-201ENST00000384385 107 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 MIR150-201ENST00000385048 84 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 RNA5SP193-201ENST00000410353 107 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
COL7A1Q02388 UBBP3-201ENST00000445497 241 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC0.66□□□□□ -2.3
COL7A1Q02388 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.66□□□□□ -2.3
COL7A1Q02388 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.66□□□□□ -2.3
COL7A1Q02388 AL161912.3-201ENST00000605404 628 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 AC073055.1-201ENST00000456901 1621 ntBASIC0.66□□□□□ -2.3
COL7A1Q02388 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.3
COL7A1Q02388 RNU1-23P-201ENST00000363361 144 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 SNORA2A-201ENST00000383885 135 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 RNA5SP266-201ENST00000410273 108 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 RNU4-72P-201ENST00000410754 173 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.65□□□□□ -2.3
COL7A1Q02388 AL391261.3-201ENST00000557194 520 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC0.65□□□□□ -2.3
COL7A1Q02388 AP003117.1-201ENST00000602771 554 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 AC243829.6-201ENST00000612652 106 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 AC103710.2-202ENST00000641454 2853 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 AL589743.1-201ENST00000551932 2712 ntBASIC0.65□□□□□ -2.3
COL7A1Q02388 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
COL7A1Q02388 RNU6-222P-201ENST00000362438 107 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 RNU6-288P-201ENST00000363690 104 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 RNU6-48P-201ENST00000384161 107 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 MIR1912-201ENST00000410389 80 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 RNU6-711P-201ENST00000517255 106 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC0.65□□□□□ -2.31
COL7A1Q02388 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC0.65□□□□□ -2.31
COL7A1Q02388 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC0.65□□□□□ -2.31
COL7A1Q02388 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.65□□□□□ -2.31
COL7A1Q02388 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC0.65□□□□□ -2.31
COL7A1Q02388 SNRPGP15-201ENST00000600149 222 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 AC090953.1-201ENST00000604305 1092 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC0.65□□□□□ -2.31
COL7A1Q02388 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.65□□□□□ -2.31
COL7A1Q02388 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC0.65□□□□□ -2.31
COL7A1Q02388 AC096533.1-201ENST00000411645 353 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC0.65□□□□□ -2.31
COL7A1Q02388 RPL21P90-201ENST00000415692 466 ntBASIC0.65□□□□□ -2.31
COL7A1Q02388 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC0.65□□□□□ -2.31
COL7A1Q02388 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.65□□□□□ -2.31
COL7A1Q02388 COX6CP18-201ENST00000448769 222 ntBASIC0.65□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms