Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC095057.3-201ENST00000567102 1157 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 MIR1273D-201ENST00000577266 86 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 MIR4285-201ENST00000581001 85 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC1.27□□□□□ -2.21
FOXA3P55318 ZRANB2-AS2-212ENST00000590186 686 ntTSL 5 BASIC1.27□□□□□ -2.21
FOXA3P55318 AL020997.3-201ENST00000602843 359 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AC007349.4-201ENST00000608114 532 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AP000238.1-201ENST00000608759 426 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 MIR6130-201ENST00000619419 109 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 PISRT1-201ENST00000626175 531 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 AC010889.1-201ENST00000566193 2666 ntBASIC1.27□□□□□ -2.21
FOXA3P55318 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.26□□□□□ -2.21
FOXA3P55318 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
FOXA3P55318 HMGN2P39-201ENST00000398005 273 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 RPL23AP39-201ENST00000415533 405 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC1.26□□□□□ -2.21
FOXA3P55318 AL135786.1-201ENST00000415892 214 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AC018630.2-202ENST00000422992 927 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 BX276092.3-201ENST00000424182 230 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA3P55318 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA3P55318 FABP5P13-201ENST00000452144 328 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 RPL23AP23-201ENST00000452590 471 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 NDUFA5P7-201ENST00000452914 242 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC1.26□□□□□ -2.21
FOXA3P55318 RPL32P14-201ENST00000463196 378 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA3P55318 AL049873.1-201ENST00000480540 376 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 COX7A2P2-201ENST00000505291 250 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA3P55318 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC1.26□□□□□ -2.21
FOXA3P55318 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC1.26□□□□□ -2.21
FOXA3P55318 AC124293.1-201ENST00000530034 493 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC1.26□□□□□ -2.21
FOXA3P55318 AC106782.4-201ENST00000568264 210 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AC012435.1-202ENST00000568772 240 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 ABBA01006766.1-201ENST00000584728 294 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 NRBF2P1-201ENST00000587407 859 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AL391813.1-201ENST00000603098 260 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AL078605.1-201ENST00000603529 500 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 AC068313.1-201ENST00000604028 1008 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 MTND4LP5-201ENST00000605152 292 ntBASIC1.26□□□□□ -2.21
FOXA3P55318 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC1.26□□□□□ -2.21
FOXA3P55318 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
FOXA3P55318 AL356421.1-201ENST00000403255 413 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 RNA5SP450-201ENST00000411206 102 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC1.25□□□□□ -2.21
FOXA3P55318 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC1.25□□□□□ -2.21
FOXA3P55318 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA3P55318 AC005345.1-201ENST00000431868 217 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
FOXA3P55318 AC096638.1-201ENST00000444678 216 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC1.25□□□□□ -2.21
FOXA3P55318 MTCO1P48-201ENST00000448024 1096 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 MTND2P24-201ENST00000453434 806 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 SSR3-208ENST00000496050 579 ntTSL 4 BASIC1.25□□□□□ -2.21
FOXA3P55318 RPL38P4-201ENST00000502376 214 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC096745.1-201ENST00000509945 370 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 RNA5SP182-201ENST00000516064 82 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 RNA5SP291-201ENST00000517222 105 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 HSPE1P18-201ENST00000517602 280 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC087276.1-201ENST00000529659 480 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA3P55318 AC008127.2-201ENST00000549925 1075 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AL359212.1-201ENST00000556608 614 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.25□□□□□ -2.21
FOXA3P55318 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC1.25□□□□□ -2.21
FOXA3P55318 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC1.25□□□□□ -2.21
FOXA3P55318 AC106734.1-201ENST00000568646 663 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC007151.1-201ENST00000572774 483 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 UBE2L4-201ENST00000587688 464 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC096586.1-201ENST00000610267 561 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC068944.2-201ENST00000610373 403 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC1.25□□□□□ -2.21
FOXA3P55318 AC009032.1-201ENST00000617574 431 ntBASIC1.25□□□□□ -2.21
FOXA3P55318 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
FOXA3P55318 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
FOXA3P55318 MTND5P11-201ENST00000511037 1812 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 RNU6-251P-201ENST00000363235 104 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 RNU6-619P-201ENST00000365146 108 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 RNU6-19P-201ENST00000384718 107 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 MIR9-3-201ENST00000385084 90 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
FOXA3P55318 AC019129.1-201ENST00000403786 261 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 PTGES3P2-201ENST00000407942 482 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 CCDC58P2-201ENST00000417131 366 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.24□□□□□ -2.21
FOXA3P55318 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.24□□□□□ -2.21
FOXA3P55318 AC007742.1-201ENST00000425789 329 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 ELOCP26-201ENST00000436067 329 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC1.24□□□□□ -2.21
FOXA3P55318 AL353705.4-201ENST00000449661 238 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC1.24□□□□□ -2.21
FOXA3P55318 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
FOXA3P55318 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC1.24□□□□□ -2.21
FOXA3P55318 HSPA8P13-201ENST00000523715 472 ntBASIC1.24□□□□□ -2.21
FOXA3P55318 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.24□□□□□ -2.21
FOXA3P55318 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.24□□□□□ -2.21
FOXA3P55318 FTX_3.1-201ENST00000610451 147 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms