Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.65□□□□□ -1.83
CTCFP49711 AC015917.1-201ENST00000579654 510 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC009977.1-201ENST00000586015 570 ntBASIC3.65□□□□□ -1.83
CTCFP49711 RSL24D1P11-201ENST00000591045 491 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC119751.7-201ENST00000600494 245 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AL359999.1-201ENST00000604513 294 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC007619.2-201ENST00000605743 379 ntBASIC3.65□□□□□ -1.83
CTCFP49711 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
CTCFP49711 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.65□□□□□ -1.83
CTCFP49711 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CTCFP49711 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CTCFP49711 GPRC6A-202ENST00000368549 2622 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CTCFP49711 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CTCFP49711 CUL1P1-201ENST00000509510 2425 ntBASIC3.64□□□□□ -1.83
CTCFP49711 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.64□□□□□ -1.83
CTCFP49711 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CTCFP49711 Y_RNA.553-201ENST00000384670 102 ntBASIC3.64□□□□□ -1.83
CTCFP49711 Z99755.1-201ENST00000414048 380 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC010153.1-201ENST00000432862 727 ntBASIC3.64□□□□□ -1.83
CTCFP49711 BX679664.1-201ENST00000434429 253 ntBASIC3.64□□□□□ -1.83
CTCFP49711 USP9YP29-201ENST00000445112 563 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AL162389.1-201ENST00000449233 177 ntBASIC3.64□□□□□ -1.83
CTCFP49711 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC3.64□□□□□ -1.83
CTCFP49711 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.64□□□□□ -1.83
CTCFP49711 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
CTCFP49711 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.64□□□□□ -1.83
CTCFP49711 RNU7-59P-201ENST00000459101 61 ntBASIC3.64□□□□□ -1.83
CTCFP49711 MTND4LP3-201ENST00000468320 276 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC092185.1-201ENST00000491371 97 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC083906.5-201ENST00000503722 328 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.64□□□□□ -1.83
CTCFP49711 AP003467.2-201ENST00000520175 319 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC107934.1-201ENST00000522215 217 ntBASIC3.64□□□□□ -1.83
CTCFP49711 ERHP1-201ENST00000523006 310 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.64□□□□□ -1.83
CTCFP49711 AC005951.1-201ENST00000576706 485 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC105224.1-201ENST00000587055 421 ntBASIC3.64□□□□□ -1.83
CTCFP49711 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.64□□□□□ -1.83
CTCFP49711 TUG1_2.1-201ENST00000614234 87 ntBASIC3.64□□□□□ -1.83
CTCFP49711 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CTCFP49711 MTND5P27-201ENST00000428871 1720 ntBASIC3.64□□□□□ -1.83
CTCFP49711 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.64□□□□□ -1.83
CTCFP49711 ZNF72P-201ENST00000425869 1908 ntBASIC3.64□□□□□ -1.83
CTCFP49711 DDX10P1-201ENST00000448545 1933 ntBASIC3.64□□□□□ -1.83
CTCFP49711 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
CTCFP49711 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.63□□□□□ -1.83
CTCFP49711 Y_RNA.164-201ENST00000363709 102 ntBASIC3.63□□□□□ -1.83
CTCFP49711 U3.12-201ENST00000364498 214 ntBASIC3.63□□□□□ -1.83
CTCFP49711 SNORA23-201ENST00000365128 182 ntBASIC3.63□□□□□ -1.83
CTCFP49711 RNU6-805P-201ENST00000365643 106 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC3.63□□□□□ -1.83
CTCFP49711 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CTCFP49711 SNORA36C-201ENST00000384289 132 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AL109755.1-201ENST00000401791 649 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AL645937.1-202ENST00000421799 937 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC3.63□□□□□ -1.83
CTCFP49711 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.63□□□□□ -1.83
CTCFP49711 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.63□□□□□ -1.83
CTCFP49711 AL591806.2-201ENST00000433122 173 ntBASIC3.63□□□□□ -1.83
CTCFP49711 TIMM9P1-201ENST00000436122 256 ntBASIC3.63□□□□□ -1.83
CTCFP49711 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.63□□□□□ -1.83
CTCFP49711 MTCO1P19-201ENST00000443487 500 ntBASIC3.63□□□□□ -1.83
CTCFP49711 RPL7P12-201ENST00000446719 750 ntBASIC3.63□□□□□ -1.83
CTCFP49711 ELOCP23-201ENST00000452014 332 ntBASIC3.63□□□□□ -1.83
CTCFP49711 RNU6-956P-201ENST00000458868 103 ntBASIC3.63□□□□□ -1.83
CTCFP49711 SNORD42A-201ENST00000459584 64 ntBASIC3.63□□□□□ -1.83
CTCFP49711 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
CTCFP49711 RPS15AP36-201ENST00000492022 382 ntBASIC3.63□□□□□ -1.83
CTCFP49711 HIGD1AP13-201ENST00000509878 289 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC008549.1-201ENST00000512900 643 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC022447.1-201ENST00000515358 464 ntBASIC3.63□□□□□ -1.83
CTCFP49711 RNU4-29P-201ENST00000515943 174 ntBASIC3.63□□□□□ -1.83
CTCFP49711 SNORA70.16-201ENST00000516390 95 ntBASIC3.63□□□□□ -1.83
CTCFP49711 HMGN1P28-201ENST00000521340 364 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.63□□□□□ -1.83
CTCFP49711 AP003181.2-201ENST00000528941 181 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC079600.2-201ENST00000550076 130 ntBASIC3.63□□□□□ -1.83
CTCFP49711 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.63□□□□□ -1.83
CTCFP49711 RPL21P5-201ENST00000554662 472 ntBASIC3.63□□□□□ -1.83
CTCFP49711 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.63□□□□□ -1.83
CTCFP49711 MIR3146-201ENST00000580367 79 ntBASIC3.63□□□□□ -1.83
CTCFP49711 MIR3118-1-201ENST00000581787 76 ntBASIC3.63□□□□□ -1.83
CTCFP49711 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.63□□□□□ -1.83
CTCFP49711 AC005771.1-201ENST00000585581 349 ntBASIC3.63□□□□□ -1.83
CTCFP49711 HMGN1P30-201ENST00000589286 268 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AL133393.1-201ENST00000603277 287 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC087752.4-201ENST00000605911 462 ntBASIC3.63□□□□□ -1.83
CTCFP49711 RN7SKP299-201ENST00000606679 301 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC245517.5-201ENST00000611529 162 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC004696.1-201ENST00000614345 607 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AL138880.2-201ENST00000616214 239 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC091953.2-201ENST00000623979 160 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
CTCFP49711 AC008505.1-205ENST00000637847 703 ntTSL 5 BASIC3.63□□□□□ -1.83
CTCFP49711 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.63□□□□□ -1.83
CTCFP49711 AC110774.1-201ENST00000623567 2018 ntBASIC3.63□□□□□ -1.83
CTCFP49711 AC005832.2-201ENST00000538921 1430 ntBASIC3.62□□□□□ -1.83
CTCFP49711 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
CTCFP49711 OR1S2-201ENST00000302592 978 ntBASIC3.62□□□□□ -1.83
CTCFP49711 DEFB108F-201ENST00000344638 222 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms