Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-492P-201ENST00000363035 104 ntBASIC1.59□□□□□ -2.16
CUX1P39880 AL356379.1-201ENST00000414105 126 ntBASIC1.59□□□□□ -2.16
CUX1P39880 AL512504.1-201ENST00000415494 778 ntBASIC1.59□□□□□ -2.16
CUX1P39880 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.59□□□□□ -2.16
CUX1P39880 HMGB1P46-201ENST00000520062 610 ntBASIC1.59□□□□□ -2.16
CUX1P39880 AC109635.4-202ENST00000531666 412 ntBASIC1.59□□□□□ -2.16
CUX1P39880 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.59□□□□□ -2.16
CUX1P39880 MIR4698-201ENST00000577795 80 ntBASIC1.59□□□□□ -2.16
CUX1P39880 FAM71BP1-201ENST00000604431 523 ntBASIC1.59□□□□□ -2.16
CUX1P39880 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.58□□□□□ -2.16
CUX1P39880 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.58□□□□□ -2.16
CUX1P39880 AL513343.1-201ENST00000451818 792 ntBASIC1.58□□□□□ -2.16
CUX1P39880 HAR1A.1-201ENST00000459583 118 ntBASIC1.58□□□□□ -2.16
CUX1P39880 AC087879.1-201ENST00000474343 374 ntBASIC1.58□□□□□ -2.16
CUX1P39880 AL135752.1-201ENST00000479477 471 ntBASIC1.58□□□□□ -2.16
CUX1P39880 PCNAP1-201ENST00000505363 709 ntBASIC1.58□□□□□ -2.16
CUX1P39880 AC110792.2-201ENST00000510278 224 ntBASIC1.58□□□□□ -2.16
CUX1P39880 RNA5SP121-201ENST00000516537 101 ntBASIC1.58□□□□□ -2.16
CUX1P39880 MIR4658-201ENST00000584344 65 ntBASIC1.58□□□□□ -2.16
CUX1P39880 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
CUX1P39880 MIR6857-201ENST00000613267 93 ntBASIC1.58□□□□□ -2.16
CUX1P39880 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
CUX1P39880 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.58□□□□□ -2.16
CUX1P39880 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC1.57□□□□□ -2.16
CUX1P39880 MIR17-201ENST00000385012 84 ntBASIC1.57□□□□□ -2.16
CUX1P39880 AC008850.1-201ENST00000427546 362 ntBASIC1.57□□□□□ -2.16
CUX1P39880 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.57□□□□□ -2.16
CUX1P39880 AC010285.1-201ENST00000470580 392 ntBASIC1.57□□□□□ -2.16
CUX1P39880 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC1.57□□□□□ -2.16
CUX1P39880 AC105313.1-201ENST00000509121 353 ntBASIC1.57□□□□□ -2.16
CUX1P39880 RNA5SP337-201ENST00000517007 109 ntBASIC1.57□□□□□ -2.16
CUX1P39880 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.57□□□□□ -2.16
CUX1P39880 AC069304.3-201ENST00000603938 1084 ntBASIC1.57□□□□□ -2.16
CUX1P39880 AL109933.3-201ENST00000619095 188 ntBASIC1.57□□□□□ -2.16
CUX1P39880 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CUX1P39880 TEX21P-201ENST00000447107 1476 ntBASIC1.57□□□□□ -2.16
CUX1P39880 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
CUX1P39880 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
CUX1P39880 RNU11-5P-201ENST00000391216 129 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC092745.2-202ENST00000411880 369 ntBASIC1.56□□□□□ -2.16
CUX1P39880 OR6C66P-201ENST00000414917 930 ntBASIC1.56□□□□□ -2.16
CUX1P39880 TRIM60P3Y-201ENST00000432201 673 ntBASIC1.56□□□□□ -2.16
CUX1P39880 RABEPKP1-201ENST00000440529 1026 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.56□□□□□ -2.16
CUX1P39880 AC105252.1-201ENST00000503089 286 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC1.56□□□□□ -2.16
CUX1P39880 AC092451.2-201ENST00000538746 658 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.56□□□□□ -2.16
CUX1P39880 7SK.7-201ENST00000603504 247 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC135178.6-201ENST00000605314 398 ntBASIC1.56□□□□□ -2.16
CUX1P39880 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.56□□□□□ -2.16
CUX1P39880 Y_RNA.85-201ENST00000363014 111 ntBASIC1.56□□□□□ -2.16
CUX1P39880 SNORD23.1-201ENST00000408212 104 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.56□□□□□ -2.16
CUX1P39880 ARF4P4-201ENST00000439608 520 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC1.56□□□□□ -2.16
CUX1P39880 SNORD97-201ENST00000459187 142 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC1.56□□□□□ -2.16
CUX1P39880 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC1.56□□□□□ -2.16
CUX1P39880 RPL26-207ENST00000583011 524 ntAPPRIS P1 TSL 3 BASIC1.56□□□□□ -2.16
CUX1P39880 AC008749.1-201ENST00000597650 306 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AL136363.1-201ENST00000605349 337 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC103810.8-201ENST00000607347 118 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC096586.2-201ENST00000610260 441 ntBASIC1.56□□□□□ -2.16
CUX1P39880 MIR4496-201ENST00000635896 61 ntBASIC1.56□□□□□ -2.16
CUX1P39880 AC096656.1-201ENST00000623826 1364 ntBASIC1.55□□□□□ -2.16
CUX1P39880 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC1.55□□□□□ -2.16
CUX1P39880 AC080100.1-201ENST00000624239 5356 ntBASIC1.55□□□□□ -2.16
CUX1P39880 RNU6-335P-201ENST00000364563 113 ntBASIC1.55□□□□□ -2.16
CUX1P39880 RPL21P90-201ENST00000415692 466 ntBASIC1.55□□□□□ -2.16
CUX1P39880 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.55□□□□□ -2.16
CUX1P39880 AL606495.1-201ENST00000422100 813 ntBASIC1.55□□□□□ -2.16
CUX1P39880 LAMTOR3P1-201ENST00000428620 370 ntBASIC1.55□□□□□ -2.16
CUX1P39880 TRBV26OR9-2-201ENST00000432077 293 ntBASIC1.55□□□□□ -2.16
CUX1P39880 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC1.55□□□□□ -2.16
CUX1P39880 OR5BM1P-201ENST00000512021 366 ntBASIC1.55□□□□□ -2.16
CUX1P39880 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC1.55□□□□□ -2.16
CUX1P39880 C5orf46-203ENST00000515291 573 ntAPPRIS ALT1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CUX1P39880 RN7SKP179-201ENST00000516126 217 ntBASIC1.55□□□□□ -2.16
CUX1P39880 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.55□□□□□ -2.16
CUX1P39880 RNU6-1181P-201ENST00000384191 106 ntBASIC1.54□□□□□ -2.16
CUX1P39880 AC007560.1-201ENST00000426912 237 ntBASIC1.54□□□□□ -2.16
CUX1P39880 CBX3P6-201ENST00000430257 527 ntBASIC1.54□□□□□ -2.16
CUX1P39880 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
CUX1P39880 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.54□□□□□ -2.16
CUX1P39880 AC096745.1-201ENST00000509945 370 ntBASIC1.54□□□□□ -2.16
CUX1P39880 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.54□□□□□ -2.16
CUX1P39880 MRPS33P3-201ENST00000513456 322 ntBASIC1.54□□□□□ -2.16
CUX1P39880 VN1R81P-201ENST00000602085 372 ntBASIC1.54□□□□□ -2.16
CUX1P39880 U73023.1-201ENST00000603134 700 ntBASIC1.54□□□□□ -2.16
CUX1P39880 AL391834.1-201ENST00000609609 560 ntBASIC1.54□□□□□ -2.16
CUX1P39880 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC1.54□□□□□ -2.16
CUX1P39880 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC1.54□□□□□ -2.16
CUX1P39880 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
CUX1P39880 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.53□□□□□ -2.16
CUX1P39880 SNORA38-201ENST00000363946 132 ntBASIC1.53□□□□□ -2.16
CUX1P39880 AC105914.1-201ENST00000511798 226 ntBASIC1.53□□□□□ -2.16
CUX1P39880 CIR1P1-201ENST00000524055 1133 ntBASIC1.53□□□□□ -2.16
CUX1P39880 AC079148.1-201ENST00000565944 819 ntBASIC1.53□□□□□ -2.16
CUX1P39880 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms