Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.14□□□□□ -1.75
HLA-DOAP06340 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.14□□□□□ -1.75
HLA-DOAP06340 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DOAP06340 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
HLA-DOAP06340 OTUD4P1-201ENST00000237841 3067 ntBASIC4.14□□□□□ -1.75
HLA-DOAP06340 MTND5P3-201ENST00000438536 1800 ntBASIC4.14□□□□□ -1.75
HLA-DOAP06340 AC090971.4-201ENST00000560291 1800 ntBASIC4.14□□□□□ -1.75
HLA-DOAP06340 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.14□□□□□ -1.75
HLA-DOAP06340 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 PABPC1P7-201ENST00000413177 1513 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 USP9YP20-201ENST00000419224 558 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC006989.1-201ENST00000427212 131 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC093106.2-201ENST00000428212 385 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 HMGB1P18-201ENST00000438801 619 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC093156.1-201ENST00000440382 670 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AL589765.3-201ENST00000446084 462 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 DDX3P2-201ENST00000446138 111 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AL118520.1-201ENST00000450770 291 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AL162395.1-201ENST00000457882 422 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC010469.1-201ENST00000463864 576 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 BTF3L4P4-201ENST00000506381 449 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 RNU4-29P-201ENST00000515943 174 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 SNORA74D-201ENST00000516404 141 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AL118558.2-201ENST00000556294 238 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 COX6CP3-201ENST00000580869 223 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 AL139395.1-201ENST00000603662 160 ntBASIC4.13□□□□□ -1.75
HLA-DOAP06340 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC4.13□□□□□ -1.75
HLA-DOAP06340 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
HLA-DOAP06340 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
HLA-DOAP06340 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 NCAPGP1-201ENST00000505112 1814 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNU6-552P-201ENST00000362869 119 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNU6-511P-201ENST00000363496 107 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 Y_RNA.231-201ENST00000364358 102 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 Y_RNA.373-201ENST00000365600 103 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNU6-38P-201ENST00000384085 107 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR153-1-201ENST00000384914 90 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR514A2-201ENST00000385131 88 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR514A3-201ENST00000385132 88 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR454-201ENST00000390180 115 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 U3.19-201ENST00000390893 196 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNU6-903P-201ENST00000391270 109 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 HMGN2P8-201ENST00000391458 268 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNA5SP56-201ENST00000410277 118 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RN7SKP111-201ENST00000410349 271 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNU2-36P-201ENST00000410361 191 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNA5SP120-201ENST00000410900 112 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RPL21P109-201ENST00000422213 475 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC005326.1-201ENST00000429197 123 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 ERLEC1P1-201ENST00000433806 578 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MTND1P18-201ENST00000448191 573 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 IFNWP4-201ENST00000453148 294 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 BX510359.1-201ENST00000456973 237 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 PPP1R2P5-201ENST00000457256 603 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RNU6-333P-201ENST00000459117 107 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RN7SL807P-201ENST00000470923 297 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 RPL21P99-201ENST00000480369 423 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC068305.1-201ENST00000497406 726 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC008489.1-201ENST00000524271 483 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AP005639.2-201ENST00000527592 928 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.12□□□□□ -1.75
HLA-DOAP06340 SETP7-201ENST00000552169 453 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC068446.3-201ENST00000555285 382 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 PSMA3P-201ENST00000555485 635 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AL121821.2-201ENST00000556081 394 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AL133153.1-201ENST00000557756 303 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 RPL21P12-201ENST00000559810 515 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 AC005668.1-201ENST00000571142 476 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR5583-1-201ENST00000580941 59 ntBASIC4.12□□□□□ -1.75
HLA-DOAP06340 MIR4775-201ENST00000581168 75 ntBASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms