Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 HNRNPDLP3-201ENST00000456745 380 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 Y_RNA.632-201ENST00000459189 102 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RNU6-261P-201ENST00000459506 102 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 AC009812.2-201ENST00000517657 457 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL3A1P02461 SUB1P2-201ENST00000556401 297 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.98□□□□□ -1.77
COL3A1P02461 AC093249.1-201ENST00000567049 203 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 LARP7P3-201ENST00000579888 337 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AC008737.2-201ENST00000599446 118 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AC093913.1-201ENST00000614178 329 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC3.98□□□□□ -1.77
COL3A1P02461 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 OR11H5P-202ENST00000641612 1325 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL3A1P02461 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
COL3A1P02461 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.98□□□□□ -1.77
COL3A1P02461 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.98□□□□□ -1.77
COL3A1P02461 RNU6-115P-201ENST00000364310 107 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RNA5SP126-201ENST00000365092 109 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RNU6-282P-201ENST00000365357 103 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 SNORA4.3-201ENST00000365564 137 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RNU6-74P-201ENST00000384235 107 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RNA5SP107-201ENST00000411358 122 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 MTATP6P18-201ENST00000417994 673 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AC092634.6-201ENST00000418558 192 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.98□□□□□ -1.77
COL3A1P02461 RPL23AP4-201ENST00000427757 463 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AL136380.1-201ENST00000447970 162 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 RPS4XP22-201ENST00000480755 780 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RPS4XP13-201ENST00000483219 789 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 RPS27P23-201ENST00000487608 251 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.98□□□□□ -1.77
COL3A1P02461 Vault.3-201ENST00000516676 95 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 PDCD5P1-201ENST00000543528 309 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC3.98□□□□□ -1.77
COL3A1P02461 MIR3945-201ENST00000581853 98 ntBASIC3.98□□□□□ -1.77
COL3A1P02461 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.98□□□□□ -1.77
COL3A1P02461 ATM-228ENST00000639240 498 ntTSL 5 BASIC3.98□□□□□ -1.77
COL3A1P02461 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
COL3A1P02461 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
COL3A1P02461 RIOK3P1-201ENST00000418778 1528 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC107081.3-201ENST00000612715 2034 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
COL3A1P02461 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL3A1P02461 RNU6-223P-201ENST00000362830 107 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.97□□□□□ -1.77
COL3A1P02461 SNORA69-201ENST00000383895 132 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 RNU1-39P-201ENST00000383897 165 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 Y_RNA.387-201ENST00000383918 102 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 Y_RNA.459-201ENST00000384251 102 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AL162578.1-201ENST00000406202 378 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AL034374.1-201ENST00000406329 351 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC023347.2-201ENST00000433994 462 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC024082.2-201ENST00000434771 238 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
COL3A1P02461 IFNA20P-201ENST00000436840 528 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL3A1P02461 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC3.97□□□□□ -1.77
COL3A1P02461 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
COL3A1P02461 AC015724.1-201ENST00000478577 156 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC006499.2-201ENST00000513470 337 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 RNA5SP401-201ENST00000515920 127 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 SNORD60.2-201ENST00000516883 86 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC3.97□□□□□ -1.77
COL3A1P02461 HIGD1AP6-201ENST00000521833 279 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC066616.2-201ENST00000559334 1481 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC007566.2-201ENST00000603642 413 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AL132822.1-201ENST00000617063 513 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 AC009248.2-201ENST00000619826 254 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 7SK.10-201ENST00000621414 298 ntBASIC3.97□□□□□ -1.77
COL3A1P02461 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
COL3A1P02461 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.77
COL3A1P02461 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.96□□□□□ -1.77
COL3A1P02461 AC004972.1-201ENST00000623934 2209 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
COL3A1P02461 MTCO1P7-201ENST00000419523 1542 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.96□□□□□ -1.78
COL3A1P02461 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL3A1P02461 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
COL3A1P02461 RNU6-1120P-201ENST00000362988 108 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 SNORA18.3-201ENST00000384122 132 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 RNU6-769P-201ENST00000384407 104 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 UBE2V1P2-201ENST00000397758 440 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.96□□□□□ -1.78
COL3A1P02461 RPS4XP8-201ENST00000402039 771 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AL590290.1-201ENST00000405336 380 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 U3.42-201ENST00000408746 214 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 MTND3P8-201ENST00000412909 339 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AC009161.1-201ENST00000417306 376 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AC018630.2-202ENST00000422992 927 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AL034379.1-201ENST00000423216 253 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 MTCO3P21-201ENST00000430791 643 ntBASIC3.96□□□□□ -1.78
COL3A1P02461 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC3.96□□□□□ -1.78
COL3A1P02461 RNU6-835P-201ENST00000516974 104 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms