Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA3O43365 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
HOXA3O43365 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.75□□□□□ -1.81
HOXA3O43365 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA3O43365 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXA3O43365 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXA3O43365 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA3O43365 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA3O43365 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 RNU6-842P-201ENST00000384269 107 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 Y_RNA.496-201ENST00000384444 101 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 Y_RNA.527-201ENST00000384573 102 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 MIR517A-201ENST00000385001 87 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA3O43365 SNRPEP4-201ENST00000435815 279 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA3O43365 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA3O43365 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA3O43365 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 RPL36AP41-201ENST00000493820 306 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 AC015795.1-201ENST00000513669 327 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 RNA5SP464-201ENST00000516251 108 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 RNU6-264P-201ENST00000517134 104 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXA3O43365 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA3O43365 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 MED28P6-201ENST00000558776 231 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXA3O43365 AC136624.4-201ENST00000573044 370 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 AC005899.2-201ENST00000584353 90 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.74□□□□□ -1.81
HOXA3O43365 AL590392.1-201ENST00000604960 446 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
HOXA3O43365 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 AC087588.2-201ENST00000617667 426 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 AC119674.1-207ENST00000641355 633 ntBASIC3.74□□□□□ -1.81
HOXA3O43365 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
HOXA3O43365 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXA3O43365 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXA3O43365 OR14L1P-202ENST00000641545 3009 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA3O43365 RAD17P1-201ENST00000418130 2042 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA3O43365 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA3O43365 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
HOXA3O43365 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA3O43365 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA3O43365 U3.15-201ENST00000365398 212 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 Y_RNA.428-201ENST00000384078 102 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 RNU6ATAC5P-201ENST00000388104 126 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AL445529.1-201ENST00000398713 389 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 SYF2P2-201ENST00000417620 583 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 RPS15AP6-201ENST00000420703 385 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC243428.1-201ENST00000421099 264 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXA3O43365 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA3O43365 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA3O43365 RPS24P6-201ENST00000452670 400 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 GSTA11P-201ENST00000452866 669 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 PCMTD1P1-201ENST00000455560 355 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 MTATP8P1-201ENST00000467115 207 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC011276.1-201ENST00000469688 323 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC018437.1-201ENST00000492214 406 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 HMGB1P30-201ENST00000492455 606 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC073073.1-201ENST00000493920 463 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC015911.1-201ENST00000495111 156 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 RNU1-86P-201ENST00000516108 154 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 RNU1-107P-201ENST00000516617 154 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 RNU6-307P-201ENST00000516743 106 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 SNORD116.3-201ENST00000517176 78 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 IGLVIV-65-201ENST00000517313 360 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC134698.5-201ENST00000519444 336 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA3O43365 AC091516.1-201ENST00000549191 703 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 TRAV37-201ENST00000553906 342 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXA3O43365 AC008269.2-201ENST00000561915 1105 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA3O43365 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA3O43365 AC023575.1-201ENST00000580510 358 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXA3O43365 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXA3O43365 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXA3O43365 AL355810.1-201ENST00000614629 552 ntBASIC3.73□□□□□ -1.81
HOXA3O43365 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXA3O43365 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 143.9 ms