Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 CR848007.1-201ENST00000442354 1699 ntBASIC3.52□□□□□ -1.85
HOXC11O43248 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HOXC11O43248 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
HOXC11O43248 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC11O43248 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
HOXC11O43248 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC11O43248 RNU6-288P-201ENST00000363690 104 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 SNORA38.1-201ENST00000364172 131 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RNU6-188P-201ENST00000364207 107 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 SNORA14A-201ENST00000364773 135 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RNU6-641P-201ENST00000384006 107 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RNU6-217P-201ENST00000384164 104 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RNU6-39P-201ENST00000384344 107 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 MIR558-201ENST00000384920 94 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RNU2-39P-201ENST00000410604 198 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 PIGFP2-201ENST00000421400 651 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RPL31P12-201ENST00000422587 358 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC11O43248 MED13P1-201ENST00000428342 171 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC11O43248 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC11O43248 GPM6BP2-201ENST00000432046 144 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC11O43248 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC11O43248 GPM6BP1-201ENST00000446387 144 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 MRPS31P2-201ENST00000451581 518 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 DCLRE1CP1-201ENST00000454630 470 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RPL7P5-201ENST00000471472 736 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 MTCO3P28-201ENST00000513351 515 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AP002963.1-201ENST00000530590 184 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC11O43248 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC11O43248 MIR3913-1-201ENST00000577744 102 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 MIR4425-201ENST00000580572 84 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC11O43248 AC174048.1-201ENST00000603389 144 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AC073648.5-201ENST00000603502 305 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AL365204.3-201ENST00000612448 685 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AC100793.4-201ENST00000613683 429 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AL161629.2-201ENST00000615347 275 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC11O43248 AC092656.1-203ENST00000624134 423 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.51□□□□□ -1.85
HOXC11O43248 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC11O43248 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.51□□□□□ -1.85
HOXC11O43248 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 Z83843.1-201ENST00000604070 3685 ntBASIC3.51□□□□□ -1.85
HOXC11O43248 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.51□□□□□ -1.85
HOXC11O43248 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC11O43248 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
HOXC11O43248 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC11O43248 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXC11O43248 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.5□□□□□ -1.85
HOXC11O43248 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXC11O43248 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXC11O43248 RNU6-512P-201ENST00000364438 103 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 SMIM11P1-201ENST00000369586 178 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 RNU6-946P-201ENST00000383878 107 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC11O43248 ELOCP14-201ENST00000428070 331 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 ELOCP7-201ENST00000439968 331 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 CYCSP32-201ENST00000440548 321 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC11O43248 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC11O43248 AC093899.1-201ENST00000457984 376 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.5□□□□□ -1.85
HOXC11O43248 AC007182.2-201ENST00000489251 402 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AC138853.1-201ENST00000503549 823 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AC117522.1-201ENST00000509821 380 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC11O43248 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.5□□□□□ -1.85
HOXC11O43248 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.5□□□□□ -1.85
HOXC11O43248 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 AC026333.2-201ENST00000542164 106 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC11O43248 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 MIR4276-201ENST00000584832 70 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.5□□□□□ -1.85
HOXC11O43248 AL161798.1-201ENST00000604630 131 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 AL160281.1-201ENST00000605307 311 ntBASIC3.5□□□□□ -1.85
HOXC11O43248 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.5□□□□□ -1.85
HOXC11O43248 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
HOXC11O43248 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC11O43248 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
HOXC11O43248 AC032011.1-201ENST00000611703 1549 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.49□□□□□ -1.85
HOXC11O43248 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HOXC11O43248 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC11O43248 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 AC068647.1-201ENST00000489539 2265 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.49□□□□□ -1.85
HOXC11O43248 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HOXC11O43248 RNU6-169P-201ENST00000365336 107 ntBASIC3.49□□□□□ -1.85
HOXC11O43248 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 164.3 ms