Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 ARF4P1-201ENST00000605447 541 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC093788.1-201ENST00000609356 927 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 U6atac.1-201ENST00000616025 117 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 MTND4P35-201ENST00000604257 1375 ntBASIC4.13□□□□□ -1.75
DDX56Q9NY93 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.13□□□□□ -1.75
DDX56Q9NY93 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC006020.1-201ENST00000420179 1854 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 RNU6-884P-201ENST00000363889 107 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 SNORA4.3-201ENST00000365564 137 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 RNA5SP252-201ENST00000391131 119 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 RNU1-101P-201ENST00000391171 127 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 SNORA11B-201ENST00000408175 129 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 NDUFS5P4-201ENST00000412983 318 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 RPL26P27-201ENST00000414397 437 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC063979.1-201ENST00000415539 377 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 EIF1P1-201ENST00000421436 341 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 HMGB1P9-201ENST00000429856 646 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC016691.1-201ENST00000441321 413 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 Z99127.3-201ENST00000448158 395 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 FDX1P2-201ENST00000450769 375 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 RPL26P9-201ENST00000457466 433 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AL031183.1-201ENST00000457667 207 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 SNRPFP3-201ENST00000457792 225 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC011352.1-201ENST00000512300 793 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 MIR2114-201ENST00000516645 80 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 NACAP3-201ENST00000552100 481 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 AC020914.4-201ENST00000597690 277 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 AL162413.1-201ENST00000603198 110 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 MIR486-1-201ENST00000612171 68 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 MIR7641-1-201ENST00000627518 61 ntBASIC4.12□□□□□ -1.75
DDX56Q9NY93 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
DDX56Q9NY93 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
DDX56Q9NY93 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
DDX56Q9NY93 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
DDX56Q9NY93 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
DDX56Q9NY93 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
DDX56Q9NY93 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.11□□□□□ -1.75
DDX56Q9NY93 SNORA14A-201ENST00000364773 135 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 Y_RNA.402-201ENST00000383972 102 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 Y_RNA.573-201ENST00000384763 105 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 CIR1P3-201ENST00000405137 479 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 MTATP6P13-201ENST00000438531 667 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC008264.1-201ENST00000447612 367 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC114755.5-201ENST00000447760 831 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 RNU7-23P-201ENST00000459465 62 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC128713.1-201ENST00000471495 306 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
DDX56Q9NY93 RNU6-1281P-201ENST00000516223 105 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 RN7SKP219-201ENST00000516825 296 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 OR5AQ1P-201ENST00000527596 927 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 OR5B10P-201ENST00000532869 642 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.11□□□□□ -1.75
DDX56Q9NY93 AC068135.2-201ENST00000569293 1028 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 MIR548AC-201ENST00000585049 88 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 SNORD39.4-201ENST00000620099 78 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 AP003122.6-201ENST00000623831 495 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
DDX56Q9NY93 ZNF285B-201ENST00000561698 1767 ntBASIC4.11□□□□□ -1.75
DDX56Q9NY93 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
DDX56Q9NY93 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
DDX56Q9NY93 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
DDX56Q9NY93 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
DDX56Q9NY93 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.1□□□□□ -1.75
DDX56Q9NY93 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.1□□□□□ -1.75
DDX56Q9NY93 AC010680.1-201ENST00000590024 3590 ntBASIC4.1□□□□□ -1.75
DDX56Q9NY93 AL139276.1-201ENST00000311910 1001 ntBASIC4.1□□□□□ -1.75
DDX56Q9NY93 RNU1-64P-201ENST00000365443 163 ntBASIC4.1□□□□□ -1.75
DDX56Q9NY93 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC4.1□□□□□ -1.75
DDX56Q9NY93 RNU1-89P-201ENST00000384592 164 ntBASIC4.1□□□□□ -1.75
DDX56Q9NY93 AL138878.1-201ENST00000405131 347 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 178.4 ms