Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC019097.1-201ENST00000424783 735 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL035407.1-201ENST00000429211 571 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 WASF1P1-201ENST00000447560 1131 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 SEM1P1-201ENST00000506694 209 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 ATP5F1P5-201ENST00000526403 760 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC013828.2-201ENST00000532487 235 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 MIR4446-201ENST00000578505 67 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 MIR544B-201ENST00000582372 78 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC136601.2-201ENST00000604356 474 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC019159.1-201ENST00000605094 187 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 BCRP9-201ENST00000605312 388 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC007619.2-201ENST00000605743 379 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC027449.1-201ENST00000608890 407 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 CR381653.2-201ENST00000624041 768 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AP003399.1-201ENST00000637534 361 ntBASIC2.67□□□□□ -1.98
VPS35Q96QK1 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.67□□□□□ -1.98
VPS35Q96QK1 AC138915.1-201ENST00000565427 1685 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC062016.1-201ENST00000355719 319 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 RNU6-769P-201ENST00000384407 104 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 RNU6-193P-201ENST00000410977 107 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.66□□□□□ -1.98
VPS35Q96QK1 RPL21P24-201ENST00000413752 448 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC063976.3-201ENST00000426849 329 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 GTF2IP20-201ENST00000431663 360 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC004924.1-201ENST00000480160 781 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AL049873.1-201ENST00000480540 376 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC034244.1-201ENST00000507687 207 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 LTV1P1-201ENST00000510683 1237 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 HMGB1P41-201ENST00000520234 440 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AP004247.1-201ENST00000531556 1289 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AGGF1P5-201ENST00000567900 919 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC010546.1-201ENST00000569391 485 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 HMGN2P15-201ENST00000585707 270 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AL356575.1-201ENST00000603008 283 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC021171.1-201ENST00000603137 706 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AL031281.1-201ENST00000604049 488 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AL035413.2-201ENST00000604801 525 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC007038.2-201ENST00000608095 740 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 AL607023.1-201ENST00000620045 248 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 UCA1.1-201ENST00000620952 75 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC012150.2-201ENST00000621300 544 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AP002782.1-201ENST00000623107 614 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 AC097655.1-201ENST00000635075 318 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 ZNF519P1-201ENST00000449011 1626 ntBASIC2.66□□□□□ -1.98
VPS35Q96QK1 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.66□□□□□ -1.98
VPS35Q96QK1 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
VPS35Q96QK1 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
VPS35Q96QK1 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
VPS35Q96QK1 RNU6-859P-201ENST00000362728 107 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 FO393413.1-201ENST00000402892 195 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 AL022400.1-201ENST00000423946 935 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 USP12PX-201ENST00000432383 1057 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 UBE2FP3-201ENST00000436366 524 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 ELOCP30-201ENST00000447108 299 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC020550.1-201ENST00000447385 163 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 RPL12P25-201ENST00000455592 494 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.65□□□□□ -1.99
VPS35Q96QK1 SNORD109B-201ENST00000458961 67 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 RNU7-59P-201ENST00000459101 61 ntBASIC2.65□□□□□ -1.99
VPS35Q96QK1 SNORD109A-201ENST00000459128 67 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 136.9 ms