Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 MIR200C-201ENST00000384980 68 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 HMGB1P17-201ENST00000403495 628 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 RNU2-28P-201ENST00000410457 189 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 RBMY1KP-201ENST00000423480 476 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 RPL7L1P10-201ENST00000427790 463 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 RPL12P25-201ENST00000455592 494 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 RPL30P15-201ENST00000457129 321 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 U8.18-201ENST00000459285 133 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 RPL31P50-201ENST00000471002 296 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 RPL21P99-201ENST00000480369 423 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AC083904.1-201ENST00000487828 231 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AP001086.1-201ENST00000494882 321 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 RNA5SP154-201ENST00000516193 111 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 AC098848.2-201ENST00000588023 330 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 AC092364.1-201ENST00000598561 471 ntTSL 3 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 AL670379.11-201ENST00000604059 253 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AL670379.10-201ENST00000604330 253 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AL670379.12-201ENST00000605291 253 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AL670379.9-201ENST00000605428 253 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AL138721.1-201ENST00000616756 179 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 U73479.1-201ENST00000618062 168 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 uc_338.11-201ENST00000619132 160 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 AC137590.2-201ENST00000619709 240 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 FP236240.3-201ENST00000623061 327 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHFRQ96EP1 API5P2-201ENST00000397055 1498 ntBASIC4.16□□□□□ -1.74
CHFRQ96EP1 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CHFRQ96EP1 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.15□□□□□ -1.74
CHFRQ96EP1 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CHFRQ96EP1 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CHFRQ96EP1 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.15□□□□□ -1.74
CHFRQ96EP1 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
CHFRQ96EP1 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
CHFRQ96EP1 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.74
CHFRQ96EP1 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.15□□□□□ -1.74
CHFRQ96EP1 RNU6-343P-201ENST00000364709 104 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 Y_RNA.414-201ENST00000384011 101 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 DHFRP6-201ENST00000401776 268 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 MIR1183-201ENST00000408856 89 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 RNA5SP104-201ENST00000410989 118 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 RNU2-6P-201ENST00000411404 190 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 OFD1P1Y-201ENST00000411756 1225 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 RPL37P10-201ENST00000412884 288 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC074085.1-201ENST00000413598 418 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC006548.1-201ENST00000427470 102 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 PRPS1P1-201ENST00000445305 876 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 DDX3P2-201ENST00000446138 111 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC107399.1-201ENST00000451226 265 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 NANOGP10-201ENST00000453325 895 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 ANP32BP2-201ENST00000454525 545 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 Y_RNA.653-201ENST00000459091 95 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC006512.1-201ENST00000468816 291 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 TMEM251P1-201ENST00000503717 318 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 HMGB3P17-201ENST00000504195 649 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC110794.1-201ENST00000505816 425 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC005921.1-201ENST00000510589 286 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 RNU6-976P-201ENST00000516086 111 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 RNU6-635P-201ENST00000516651 102 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 IGLVIV-53-201ENST00000520107 367 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 YPEL5P3-201ENST00000547227 352 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.15□□□□□ -1.75
CHFRQ96EP1 AF038458.1-201ENST00000588406 262 ntBASIC4.15□□□□□ -1.75
CHFRQ96EP1 AC016727.2-201ENST00000603988 621 ntBASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms