Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RNU7-66P-201ENST00000459469 62 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-1208P-201ENST00000459588 107 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-1038P-201ENST00000516516 104 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 SNORA70.18-201ENST00000516696 98 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-566P-201ENST00000516790 107 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RNU6-988P-201ENST00000519081 107 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AP000889.2-201ENST00000532684 490 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 APOOP3-201ENST00000536787 586 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC018630.1-201ENST00000541376 925 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AL118558.2-201ENST00000556294 238 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC006006.1-201ENST00000603082 144 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 uc_338.22-201ENST00000622722 187 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 AC011155.2-201ENST00000623202 216 ntBASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
USHBP1Q8N6Y0 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.61
USHBP1Q8N6Y0 AL450326.2-201ENST00000421913 1962 ntBASIC4.96□□□□□ -1.61
USHBP1Q8N6Y0 AC093535.2-201ENST00000624769 2326 ntBASIC4.96□□□□□ -1.61
USHBP1Q8N6Y0 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC011155.1-201ENST00000316512 456 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.31-201ENST00000362574 102 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-179P-201ENST00000363350 107 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 SNORD113-7-201ENST00000363762 77 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.378-201ENST00000365652 113 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-146P-201ENST00000384602 108 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 SNORA68.2-201ENST00000391263 128 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 RN7SKP158-201ENST00000410453 326 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-1304P-201ENST00000411374 106 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 PMCHL1-202ENST00000423102 261 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AL358176.2-201ENST00000425769 204 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC073063.1-201ENST00000434352 607 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC127537.2-201ENST00000439258 465 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 RPL32P28-201ENST00000443577 397 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 RPL21P23-201ENST00000446654 460 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 CYCSP35-201ENST00000451978 304 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.654-201ENST00000497848 106 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.720-201ENST00000517166 92 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC008011.1-201ENST00000545989 227 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC012603.1-201ENST00000606424 528 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AP001486.3-201ENST00000615334 372 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC243312.2-201ENST00000623340 601 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 AC121333.1-201ENST00000567488 2709 ntBASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 CD36-221ENST00000534394 1741 ntTSL 2 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.96□□□□□ -1.62
USHBP1Q8N6Y0 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC073346.2-201ENST00000624724 2058 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 Y_RNA.28-201ENST00000362554 111 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 SNORD9-201ENST00000362566 104 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 RNA5SP72-201ENST00000364442 117 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AL356057.3-201ENST00000402607 340 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-370P-201ENST00000411008 104 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 RPL12P46-201ENST00000436610 195 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 HMGB3P11-201ENST00000440127 604 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC008155.2-201ENST00000464337 397 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 RN7SKP24-201ENST00000515888 284 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 RNU6-273P-201ENST00000516937 96 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC022634.1-201ENST00000520765 532 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC107016.1-201ENST00000550463 337 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 MIR5690-201ENST00000583739 73 ntBASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC4.95□□□□□ -1.62
USHBP1Q8N6Y0 Z82243.1-201ENST00000609432 473 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 102.7 ms