Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MTND5P19-201ENST00000424872 1794 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RNU6-859P-201ENST00000362728 107 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 Y_RNA.245-201ENST00000364493 95 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RNU1-109P-201ENST00000383960 147 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RNU6-723P-201ENST00000383973 107 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 SNORA26.7-201ENST00000391288 122 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 CCNG1P1-201ENST00000406783 885 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RNU6-757P-201ENST00000410334 100 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RNU2-52P-201ENST00000410680 190 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RN7SKP123-201ENST00000410732 291 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RN7SKP58-201ENST00000411010 305 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RPL17P12-201ENST00000413391 526 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 USP9YP13-201ENST00000417797 480 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 ELOCP9-201ENST00000418624 239 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 HMGB1P49-201ENST00000418882 569 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RPS15AP7-201ENST00000439294 405 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 DPPA3P1-201ENST00000448050 469 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AL009048.1-201ENST00000450437 298 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 DUXAP8-207ENST00000456786 622 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RPPH1-2P-201ENST00000516688 293 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 UBTFL10-201ENST00000528532 562 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AP000857.1-201ENST00000532151 543 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AC093012.1-202ENST00000549403 582 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AL356022.1-201ENST00000557465 483 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AC090616.3-201ENST00000582184 217 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AC007038.2-201ENST00000608095 740 ntBASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.84□□□□□ -1.95
HDDC3Q8N4P3 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC106754.1-201ENST00000562632 1513 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC092125.1-201ENST00000562568 1995 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 RNU2-49P-201ENST00000410666 184 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 OFD1P1Y-201ENST00000411756 1225 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 BMS1P22-201ENST00000414726 313 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 FAM103A2P-201ENST00000444122 354 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC013267.1-201ENST00000458227 267 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 RNU7-59P-201ENST00000459101 61 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 RPS29P20-201ENST00000489592 171 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC104090.1-201ENST00000506341 1171 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC008413.1-201ENST00000511864 177 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 BNIP3P23-201ENST00000599655 511 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 RPL23AP88-201ENST00000605759 454 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC140725.3-201ENST00000616193 880 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AL356596.1-201ENST00000624230 379 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AC097655.1-201ENST00000635075 318 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 AL355596.1-201ENST00000565399 3996 ntBASIC2.83□□□□□ -1.96
HDDC3Q8N4P3 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 RNU6-461P-201ENST00000364195 107 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC106883.1-201ENST00000418805 562 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 MYL8P-204ENST00000431574 518 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC004854.1-201ENST00000440356 349 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AL513328.1-201ENST00000446460 224 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC020550.1-201ENST00000447385 163 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC010631.1-201ENST00000474150 156 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC126182.1-201ENST00000478134 357 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 RNU6-927P-201ENST00000516199 100 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC007115.1-201ENST00000546853 234 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC123904.3-201ENST00000547218 814 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC103710.1-201ENST00000610003 901 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC013562.2-201ENST00000611632 603 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AL590808.1-201ENST00000618696 141 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC092608.2-201ENST00000624427 218 ntBASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.82□□□□□ -1.96
HDDC3Q8N4P3 MIR7515-201ENST00000637837 67 ntBASIC2.82□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms