Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 Y_RNA.61-201ENST00000362835 102 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RNA5SP235-201ENST00000365411 114 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RNU6-641P-201ENST00000384006 107 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL354719.1-201ENST00000406535 843 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RNU6-373P-201ENST00000411247 98 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 BEND7P1-201ENST00000422058 457 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 OR2AS1P-201ENST00000427827 319 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 MED13P1-201ENST00000428342 171 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 MTATP6P16-201ENST00000434543 526 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 MTND4LP16-201ENST00000440828 295 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC016696.1-201ENST00000446949 318 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC092001.1-201ENST00000453012 261 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 HMGB3P30-201ENST00000457863 606 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC126389.1-201ENST00000477436 290 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL163973.1-201ENST00000484753 577 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RPL39P36-201ENST00000490784 156 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 HMGB1P22-201ENST00000505315 124 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RNU6-1095P-201ENST00000516148 108 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 SNORD27.1-201ENST00000516319 72 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC123904.3-201ENST00000547218 814 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 TGIF1P1-201ENST00000558095 802 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 MIR5685-201ENST00000579080 79 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AP001029.3-201ENST00000588063 596 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC011712.1-201ENST00000588959 234 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL603758.1-201ENST00000618654 241 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 C2orf27A-204ENST00000623058 969 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AC092326.2-201ENST00000624772 1561 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 AL645937.1-201ENST00000641739 1652 ntBASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.33□□□□□ -1.88
CLIP4Q8N3C7 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 RNU2-36P-201ENST00000410361 191 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 RNU2-39P-201ENST00000410604 198 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 UBE2FP1-201ENST00000416536 447 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 MTCYBP8-201ENST00000422855 651 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC005094.1-201ENST00000440420 368 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 ELOCP23-201ENST00000452014 332 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC103987.1-201ENST00000473394 348 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 RPL7P23-201ENST00000493874 747 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC116562.3-201ENST00000506136 177 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC010486.1-201ENST00000511793 424 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC026402.1-201ENST00000513642 170 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC105417.1-201ENST00000514691 285 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 SNORD60.2-201ENST00000516883 86 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC068587.5-201ENST00000528506 175 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC103843.2-201ENST00000530523 682 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC018638.8-201ENST00000588755 281 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AL117336.2-201ENST00000602435 335 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC010591.1-201ENST00000603941 649 ntBASIC3.32□□□□□ -1.88
CLIP4Q8N3C7 AC010338.1-201ENST00000621823 717 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms