Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RPS29P9-201ENST00000440360 171 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 RN7SL443P-201ENST00000464331 290 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 RN7SL41P-201ENST00000476144 297 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC012158.1-204ENST00000483430 465 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 RNU6-861P-201ENST00000516745 106 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC006077.1-201ENST00000604746 343 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AL365265.1-201ENST00000621045 234 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 U6.92-201ENST00000636464 89 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AC139769.1-204ENST00000472297 1931 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 AL672167.1-204ENST00000641875 3017 ntBASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
SH3RF1Q7Z6J0 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 SNORD50.1-201ENST00000362987 71 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AL033519.2-201ENST00000403958 392 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 SNORA77-201ENST00000408716 125 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC008065.1-201ENST00000428525 348 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 RPL26P6-201ENST00000440913 438 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC073587.1-201ENST00000447093 876 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 RPS11P1-201ENST00000451072 473 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AL691482.1-201ENST00000453255 87 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 RN7SKP210-201ENST00000459176 261 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 RN7SL319P-201ENST00000480656 221 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 GMPSP1-201ENST00000514075 579 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 RNU6-143P-201ENST00000516942 93 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 MRPS36P4-201ENST00000534436 298 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC098826.3-201ENST00000603823 466 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC009314.1-201ENST00000603871 304 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AP000787.2-201ENST00000604432 568 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC123912.5-201ENST00000605470 343 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 MIR8076-201ENST00000611401 83 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 AC015914.2-201ENST00000618167 288 ntBASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.66□□□□□ -1.5
SH3RF1Q7Z6J0 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AC063976.2-201ENST00000425667 3556 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 SAMMSON-226ENST00000642089 1582 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 Y_RNA.534-201ENST00000384599 112 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 Y_RNA.541-201ENST00000384640 113 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 SNORA66-201ENST00000384792 133 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 U3.22-201ENST00000391120 215 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 Y_RNA.602-201ENST00000410535 92 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 CYCSP10-201ENST00000417973 294 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 TMEM167AP1-201ENST00000423409 219 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 RANP8-201ENST00000444720 713 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AL445433.1-201ENST00000457507 257 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 RNU7-87P-201ENST00000459343 62 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 MIR892C-201ENST00000516410 77 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 IGKV2-38-201ENST00000517443 247 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AC005868.1-201ENST00000536421 331 ntBASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC5.65□□□□□ -1.5
SH3RF1Q7Z6J0 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
SH3RF1Q7Z6J0 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.51
SH3RF1Q7Z6J0 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SH3RF1Q7Z6J0 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.65□□□□□ -1.51
SH3RF1Q7Z6J0 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
SH3RF1Q7Z6J0 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.65□□□□□ -1.51
SH3RF1Q7Z6J0 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC107027.3-201ENST00000565095 3473 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 AC005332.5-201ENST00000591222 2919 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RNU6-858P-201ENST00000362436 107 ntBASIC5.64□□□□□ -1.51
SH3RF1Q7Z6J0 RNU6-1155P-201ENST00000363554 107 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms