Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 SCARNA15.2-201ENST00000516409 127 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 RNU6-1016P-201ENST00000516689 94 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AC087854.1-201ENST00000519706 414 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.36□□□□□ -1.71
USP53Q70EK8 MED28P6-201ENST00000558776 231 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 MIR3921-201ENST00000577308 85 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.36□□□□□ -1.71
USP53Q70EK8 AC002044.1-201ENST00000606707 158 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 SNORD91B-202ENST00000608459 222 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 MME-201ENST00000360490 2360 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 AL133243.3-201ENST00000617415 3004 ntBASIC4.36□□□□□ -1.71
USP53Q70EK8 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.36□□□□□ -1.71
USP53Q70EK8 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
USP53Q70EK8 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
USP53Q70EK8 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC4.35□□□□□ -1.71
USP53Q70EK8 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 MTND5P10-201ENST00000603719 1809 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.35□□□□□ -1.71
USP53Q70EK8 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 RNU6-1303P-201ENST00000364841 107 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 RNU6-1279P-201ENST00000383917 103 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 RNU6-1181P-201ENST00000384191 106 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 MIR578-201ENST00000384828 96 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC245054.2-201ENST00000415639 319 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.35□□□□□ -1.71
USP53Q70EK8 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.35□□□□□ -1.71
USP53Q70EK8 FGF7P3-201ENST00000454645 303 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 RPL5P30-201ENST00000465511 891 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC034236.1-201ENST00000469891 373 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC105137.1-201ENST00000484355 562 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC026801.1-201ENST00000497178 464 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 SUMO2P6-201ENST00000505273 288 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC116337.1-201ENST00000509680 687 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 PARP4P3-201ENST00000510265 317 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 RNA5SP471-201ENST00000516971 106 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.35□□□□□ -1.71
USP53Q70EK8 CYCSP29-201ENST00000533731 318 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC100830.2-201ENST00000581636 240 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 MIR548AC-201ENST00000585049 88 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC002545.1-201ENST00000592511 181 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.35□□□□□ -1.71
USP53Q70EK8 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.35□□□□□ -1.71
USP53Q70EK8 AL355802.3-201ENST00000607571 545 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AC107294.1-201ENST00000609524 467 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AL157817.1-201ENST00000614264 790 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.35□□□□□ -1.71
USP53Q70EK8 AC067931.1-201ENST00000624190 671 ntBASIC4.35□□□□□ -1.71
USP53Q70EK8 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.35□□□□□ -1.71
USP53Q70EK8 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC4.35□□□□□ -1.71
USP53Q70EK8 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC4.35□□□□□ -1.71
USP53Q70EK8 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.35□□□□□ -1.71
USP53Q70EK8 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
USP53Q70EK8 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.34□□□□□ -1.71
USP53Q70EK8 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 SNORA63C-201ENST00000364578 129 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 SNORA33.2-201ENST00000365413 134 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 RNU6-328P-201ENST00000390887 106 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 RNU6-628P-201ENST00000410675 107 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC063979.1-201ENST00000415539 377 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC4.34□□□□□ -1.71
USP53Q70EK8 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.34□□□□□ -1.71
USP53Q70EK8 Z74021.1-201ENST00000423610 407 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC4.34□□□□□ -1.71
USP53Q70EK8 AL590632.1-201ENST00000424289 371 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AL592045.1-201ENST00000429867 352 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 MTCO3P10-201ENST00000455912 772 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 RPL23AP31-201ENST00000456160 467 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 RPL30P15-201ENST00000457129 321 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 RN7SL98P-201ENST00000462271 300 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 RPS15AP34-201ENST00000487776 387 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.34□□□□□ -1.71
USP53Q70EK8 AC020593.1-201ENST00000507399 299 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC022634.1-201ENST00000520765 532 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.71
USP53Q70EK8 SNRPGP18-201ENST00000553000 214 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC098826.3-201ENST00000603823 466 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC116312.1-201ENST00000606841 314 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC040896.1-201ENST00000613819 479 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AL355810.1-201ENST00000614629 552 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC133104.2-201ENST00000615272 193 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 MIR6128-201ENST00000615528 109 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.34□□□□□ -1.71
USP53Q70EK8 ATP5A1P2-202ENST00000616464 443 ntBASIC4.34□□□□□ -1.71
USP53Q70EK8 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 189.9 ms