Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 RPS15AP34-201ENST00000487776 387 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC106872.3-201ENST00000495104 446 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 MEG8-218ENST00000556720 456 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 VN1R92P-201ENST00000598511 928 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC136601.2-201ENST00000604356 474 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC007619.2-201ENST00000605743 379 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AC012150.2-201ENST00000621300 544 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 AP003399.1-201ENST00000637534 361 ntBASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC40Q4G0X9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 MIR6073-201ENST00000352083 89 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 RNU6-140P-201ENST00000384566 108 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 MIR19A-201ENST00000384878 82 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 MIR9-1-201ENST00000385198 89 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AL358075.3-201ENST00000426289 226 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC011816.1-201ENST00000441346 546 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 SRIP1-201ENST00000489235 288 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC104685.1-201ENST00000502445 371 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 RNU5A-4P-201ENST00000516588 111 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 ZDHHC20P3-201ENST00000531576 336 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC123904.3-201ENST00000547218 814 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 MIR544B-201ENST00000582372 78 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC005498.1-201ENST00000592125 465 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 BNIP3P40-201ENST00000596017 556 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 BCRP9-201ENST00000605312 388 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC140725.3-201ENST00000616193 880 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AC103706.2-201ENST00000638080 240 ntBASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
CCDC40Q4G0X9 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 RNU1-100P-201ENST00000365255 165 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 RNA5SP88-201ENST00000365560 109 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 RPLP0P7-201ENST00000416050 667 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 HMGB1P49-201ENST00000418882 569 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 GTF2IP20-201ENST00000431663 360 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 SUMO2P6-201ENST00000505273 288 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 HSPE1P23-201ENST00000509838 286 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AC110760.3-202ENST00000515177 371 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 RNU6-390P-201ENST00000516259 103 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 CKS1BP7-201ENST00000522230 235 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 HMGN2P15-201ENST00000585707 270 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 OR1M4P-201ENST00000589199 287 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 BNIP3P23-201ENST00000599655 511 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AC021171.1-201ENST00000603137 706 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AC004908.2-201ENST00000609090 574 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 FTX_3.1-201ENST00000610451 147 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 AC079395.3-201ENST00000615161 484 ntBASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC40Q4G0X9 ZNF736P9Y-201ENST00000439586 1345 ntBASIC2.84□□□□□ -1.96
CCDC40Q4G0X9 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.96
CCDC40Q4G0X9 ZNF271P-202ENST00000465539 1970 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC092125.1-201ENST00000562568 1995 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 OFD1P6Y-202ENST00000451061 2724 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 SNORD62.1-201ENST00000362541 86 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 RNU6-769P-201ENST00000384407 104 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AL360182.1-201ENST00000397433 468 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC096664.2-201ENST00000411843 406 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 RPL21P24-201ENST00000413752 448 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AL008987.1-201ENST00000415528 237 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AL035407.1-201ENST00000429211 571 ntBASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC2.83□□□□□ -1.96
CCDC40Q4G0X9 USP12PX-201ENST00000432383 1057 ntBASIC2.83□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms