Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 RNU6-1282P-201ENST00000516735 96 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC4.73□□□□□ -1.65
SF3A1Q15459 MAFTRR-204ENST00000568389 506 ntTSL 4 BASIC4.73□□□□□ -1.65
SF3A1Q15459 AC136601.2-201ENST00000604356 474 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AC004805.2-201ENST00000605382 482 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.73□□□□□ -1.65
SF3A1Q15459 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SF3A1Q15459 AC010733.2-201ENST00000589496 5702 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SF3A1Q15459 AC007256.1-201ENST00000392253 2765 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SF3A1Q15459 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.72□□□□□ -1.65
SF3A1Q15459 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SF3A1Q15459 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC4.72□□□□□ -1.65
SF3A1Q15459 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SF3A1Q15459 RNU6-715P-201ENST00000365204 103 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 Y_RNA.390-201ENST00000383932 102 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AL356776.1-201ENST00000406574 447 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 EEF1A1P40-201ENST00000412883 573 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AL080313.1-201ENST00000434947 405 ntTSL 2 BASIC4.72□□□□□ -1.65
SF3A1Q15459 SNRPEP4-201ENST00000435815 279 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 MTCO3P18-201ENST00000440206 761 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SF3A1Q15459 IGKV1OR-3-201ENST00000446944 348 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 SSXP4-201ENST00000451349 245 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 MTCYBP18-201ENST00000501056 747 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC018710.1-201ENST00000506509 158 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 MTCO3P9-201ENST00000506989 781 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.72□□□□□ -1.65
SF3A1Q15459 RNU6-1038P-201ENST00000516516 104 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 NARSP2-201ENST00000518524 679 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AF235103.2-201ENST00000525753 346 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AL157871.3-201ENST00000557231 293 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 MIR548AC-201ENST00000585049 88 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC104662.1-201ENST00000604448 511 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AL035413.2-201ENST00000604801 525 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
SF3A1Q15459 MIR6076-201ENST00000617521 113 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC011944.2-201ENST00000624440 683 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 AC100810.6-201ENST00000638068 285 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.72□□□□□ -1.65
SF3A1Q15459 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SF3A1Q15459 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SF3A1Q15459 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
SF3A1Q15459 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
SF3A1Q15459 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 RNU6-38P-201ENST00000384085 107 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 RNU6-1127P-201ENST00000384580 107 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 SNORA1.3-201ENST00000384676 136 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SF3A1Q15459 SNORD70.1-201ENST00000391007 85 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 RNU2-68P-201ENST00000410878 191 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC4.71□□□□□ -1.66
SF3A1Q15459 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC4.71□□□□□ -1.66
SF3A1Q15459 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 COX6B1P7-201ENST00000430845 235 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 ERLEC1P1-201ENST00000433806 578 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.71□□□□□ -1.66
SF3A1Q15459 SNRPEP9-201ENST00000436794 238 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC4.71□□□□□ -1.66
SF3A1Q15459 AC006011.1-201ENST00000442758 349 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC4.71□□□□□ -1.66
SF3A1Q15459 RPS15AP27-201ENST00000449183 343 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.71□□□□□ -1.66
SF3A1Q15459 RNU6-333P-201ENST00000459117 107 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 RPL21P41-201ENST00000459863 264 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 RN7SL303P-201ENST00000469773 251 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.71□□□□□ -1.66
SF3A1Q15459 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC4.71□□□□□ -1.66
SF3A1Q15459 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC4.71□□□□□ -1.66
SF3A1Q15459 NDUFB4P9-201ENST00000511646 388 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.71□□□□□ -1.66
SF3A1Q15459 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.71□□□□□ -1.66
SF3A1Q15459 AC128687.2-201ENST00000609657 566 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AC114781.5-201ENST00000615297 108 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 SNORD39.4-201ENST00000620099 78 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AL773545.4-201ENST00000637262 310 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 AL513478.4-201ENST00000641636 310 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 OR52H1-202ENST00000641796 1061 ntBASIC4.71□□□□□ -1.66
SF3A1Q15459 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SF3A1Q15459 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SF3A1Q15459 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms