Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC098848.1-201ENST00000588466 567 ntTSL 4 BASIC3.93□□□□□ -1.78
COL4A3Q01955 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.93□□□□□ -1.78
COL4A3Q01955 AC023813.4-201ENST00000607580 580 ntBASIC3.93□□□□□ -1.78
COL4A3Q01955 AC090425.1-201ENST00000610007 140 ntBASIC3.93□□□□□ -1.78
COL4A3Q01955 AL390240.1-201ENST00000612950 384 ntBASIC3.93□□□□□ -1.78
COL4A3Q01955 AC083806.3-201ENST00000614016 455 ntBASIC3.93□□□□□ -1.78
COL4A3Q01955 MIR6864-201ENST00000617935 70 ntBASIC3.93□□□□□ -1.78
COL4A3Q01955 AL136313.1-201ENST00000624804 202 ntBASIC3.93□□□□□ -1.78
COL4A3Q01955 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.93□□□□□ -1.78
COL4A3Q01955 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A3Q01955 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A3Q01955 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A3Q01955 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
COL4A3Q01955 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A3Q01955 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
COL4A3Q01955 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A3Q01955 SRP72P2-201ENST00000344851 1979 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC121333.1-201ENST00000567488 2709 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 RNA5SP267-201ENST00000364893 126 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 MIR513A2-201ENST00000385249 127 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AL139397.2-201ENST00000404529 772 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 RNU6-985P-201ENST00000410182 104 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 RN7SKP158-201ENST00000410453 326 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 ATP5A1P2-201ENST00000412323 255 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.92□□□□□ -1.78
COL4A3Q01955 AL160004.2-201ENST00000432935 350 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.92□□□□□ -1.78
COL4A3Q01955 AF228730.2-201ENST00000438784 848 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AL035666.1-201ENST00000446195 348 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AL162395.1-201ENST00000457882 422 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.92□□□□□ -1.78
COL4A3Q01955 AC017037.2-201ENST00000513850 890 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.92□□□□□ -1.78
COL4A3Q01955 RPS27AP18-201ENST00000515536 459 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 RN7SKP18-201ENST00000516005 275 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 RNU6-256P-201ENST00000516747 97 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC3.92□□□□□ -1.78
COL4A3Q01955 AL137161.1-201ENST00000532231 390 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.92□□□□□ -1.78
COL4A3Q01955 AL117187.1-201ENST00000555482 181 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC110588.1-201ENST00000559699 137 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 CYP4A43P-201ENST00000568156 121 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 AC005014.2-201ENST00000607795 599 ntBASIC3.92□□□□□ -1.78
COL4A3Q01955 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
COL4A3Q01955 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC3.92□□□□□ -1.78
COL4A3Q01955 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL4A3Q01955 MTND5P19-201ENST00000424872 1794 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 RNU6-1078P-201ENST00000364522 103 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 SNORD115-7-201ENST00000365306 82 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 RNA5SP306-201ENST00000411087 107 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 DBIP2-201ENST00000419076 262 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 RPL31P12-201ENST00000422587 358 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC005300.1-201ENST00000428401 373 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.91□□□□□ -1.78
COL4A3Q01955 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AC092013.1-201ENST00000438795 332 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC127537.2-201ENST00000439258 465 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 Y_RNA.638-201ENST00000459374 113 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AC017037.1-201ENST00000508460 471 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC104806.1-201ENST00000508720 308 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 MTCO2P24-201ENST00000515611 426 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 Y_RNA.673-201ENST00000516306 88 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 IGLVIV-53-201ENST00000520107 367 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC109635.4-202ENST00000531666 412 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 IMMP1LP2-201ENST00000552954 492 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AP001180.2-201ENST00000579413 422 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AC090409.2-202ENST00000585706 604 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AC007938.3-201ENST00000604965 623 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC133104.2-201ENST00000615272 193 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AP001486.3-201ENST00000615334 372 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 AC025034.2-201ENST00000623264 286 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.91□□□□□ -1.78
COL4A3Q01955 AL049641.1-201ENST00000441055 1948 ntBASIC3.91□□□□□ -1.78
COL4A3Q01955 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL4A3Q01955 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
COL4A3Q01955 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC3.91□□□□□ -1.78
COL4A3Q01955 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A3Q01955 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A3Q01955 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A3Q01955 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A3Q01955 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL4A3Q01955 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 144.9 ms