Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CTCFP49711 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CTCFP49711 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.67□□□□□ -1.82
CTCFP49711 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CTCFP49711 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.67□□□□□ -1.82
CTCFP49711 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 RPL22P17-201ENST00000438729 315 ntBASIC3.67□□□□□ -1.82
CTCFP49711 KATNBL1P3-201ENST00000443475 909 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AL360221.1-201ENST00000445989 335 ntBASIC3.67□□□□□ -1.82
CTCFP49711 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 AL513328.1-201ENST00000446460 224 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AL592447.1-201ENST00000447592 540 ntBASIC3.67□□□□□ -1.82
CTCFP49711 ST13P20-201ENST00000447996 1065 ntBASIC3.67□□□□□ -1.82
CTCFP49711 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.67□□□□□ -1.82
CTCFP49711 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.67□□□□□ -1.82
CTCFP49711 RPS27P29-201ENST00000463110 252 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.67□□□□□ -1.82
CTCFP49711 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.67□□□□□ -1.82
CTCFP49711 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 IL7R-208ENST00000511982 612 ntTSL 2 BASIC3.67□□□□□ -1.82
CTCFP49711 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.67□□□□□ -1.82
CTCFP49711 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.67□□□□□ -1.82
CTCFP49711 AP003122.4-201ENST00000530980 758 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 TRAV37-201ENST00000553906 342 ntBASIC3.67□□□□□ -1.82
CTCFP49711 OR11H5P-201ENST00000554039 926 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AL133153.1-201ENST00000557756 303 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC3.67□□□□□ -1.82
CTCFP49711 COX6CP3-201ENST00000580869 223 ntBASIC3.67□□□□□ -1.82
CTCFP49711 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 BNIP3P8-201ENST00000597863 560 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 AC245008.1-201ENST00000608123 476 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC004067.1-201ENST00000608733 700 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AL603758.1-201ENST00000618654 241 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC022149.2-201ENST00000621061 203 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC009878.1-201ENST00000621819 340 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC095031.1-201ENST00000623685 672 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC019226.1-201ENST00000625666 515 ntBASIC3.67□□□□□ -1.82
CTCFP49711 AC243829.7-201ENST00000633081 225 ntBASIC3.67□□□□□ -1.82
CTCFP49711 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CTCFP49711 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.67□□□□□ -1.82
CTCFP49711 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.67□□□□□ -1.82
CTCFP49711 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
CTCFP49711 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.66□□□□□ -1.82
CTCFP49711 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CTCFP49711 Y_RNA.598-201ENST00000410480 95 ntBASIC3.66□□□□□ -1.82
CTCFP49711 RNU6-55P-201ENST00000411092 107 ntBASIC3.66□□□□□ -1.82
CTCFP49711 RNU6-954P-201ENST00000411355 107 ntBASIC3.66□□□□□ -1.82
CTCFP49711 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.66□□□□□ -1.82
CTCFP49711 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.66□□□□□ -1.82
CTCFP49711 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.66□□□□□ -1.82
CTCFP49711 RPL35AP22-201ENST00000436855 335 ntBASIC3.66□□□□□ -1.82
CTCFP49711 RABEPKP1-201ENST00000440529 1026 ntBASIC3.66□□□□□ -1.82
CTCFP49711 RPL17P49-201ENST00000443728 411 ntBASIC3.66□□□□□ -1.82
CTCFP49711 MTND1P29-201ENST00000448112 647 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.66□□□□□ -1.82
CTCFP49711 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.66□□□□□ -1.82
CTCFP49711 SNRPFP4-201ENST00000456366 242 ntBASIC3.66□□□□□ -1.82
CTCFP49711 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.66□□□□□ -1.82
CTCFP49711 RPS23P3-201ENST00000470993 430 ntBASIC3.66□□□□□ -1.82
CTCFP49711 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
CTCFP49711 CBX3P3-201ENST00000508108 532 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC093297.2-205ENST00000508123 572 ntTSL 3 BASIC3.66□□□□□ -1.82
CTCFP49711 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.66□□□□□ -1.82
CTCFP49711 RN7SKP272-201ENST00000516988 232 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AP000857.1-201ENST00000532151 543 ntBASIC3.66□□□□□ -1.82
CTCFP49711 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.66□□□□□ -1.82
CTCFP49711 AC026333.2-201ENST00000542164 106 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.66□□□□□ -1.82
CTCFP49711 TGIF1P1-201ENST00000558095 802 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC092718.6-202ENST00000563072 408 ntTSL 2 BASIC3.66□□□□□ -1.82
CTCFP49711 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.66□□□□□ -1.82
CTCFP49711 MTCO3P24-201ENST00000572729 782 ntBASIC3.66□□□□□ -1.82
CTCFP49711 SNORD53-201ENST00000579969 78 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC007038.2-201ENST00000608095 740 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC004908.2-201ENST00000609090 574 ntBASIC3.66□□□□□ -1.82
CTCFP49711 AC093838.1-201ENST00000613014 469 ntBASIC3.66□□□□□ -1.82
CTCFP49711 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.66□□□□□ -1.82
CTCFP49711 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
CTCFP49711 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC3.66□□□□□ -1.82
CTCFP49711 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.65□□□□□ -1.82
CTCFP49711 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
CTCFP49711 Y_RNA.51-201ENST00000362725 102 ntBASIC3.65□□□□□ -1.83
CTCFP49711 RNU5A-8P-201ENST00000364102 114 ntBASIC3.65□□□□□ -1.83
CTCFP49711 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC3.65□□□□□ -1.83
CTCFP49711 RNU6-432P-201ENST00000384196 109 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.65□□□□□ -1.83
CTCFP49711 HMGN1P14-201ENST00000412459 517 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC3.65□□□□□ -1.83
CTCFP49711 YPEL5P1-201ENST00000419731 367 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.65□□□□□ -1.83
CTCFP49711 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.65□□□□□ -1.83
CTCFP49711 PGBD4P3-201ENST00000440731 581 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AL022238.1-201ENST00000442557 355 ntBASIC3.65□□□□□ -1.83
CTCFP49711 HSPE1P6-201ENST00000479457 291 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AC010424.1-201ENST00000506336 297 ntBASIC3.65□□□□□ -1.83
CTCFP49711 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
CTCFP49711 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms