Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC4.07□□□□□ -1.76
MSX2P35548 ATP1B3P1-201ENST00000605365 821 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 FAM25E-202ENST00000608562 189 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC009570.1-201ENST00000609599 745 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC004825.2-201ENST00000616634 455 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC007485.1-201ENST00000616755 206 ntBASIC4.07□□□□□ -1.76
MSX2P35548 AC007792.1-201ENST00000623023 402 ntBASIC4.07□□□□□ -1.76
MSX2P35548 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.07□□□□□ -1.76
MSX2P35548 AC119674.1-207ENST00000641355 633 ntBASIC4.07□□□□□ -1.76
MSX2P35548 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSX2P35548 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC4.07□□□□□ -1.76
MSX2P35548 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
MSX2P35548 ZNF807-201ENST00000328088 1707 ntBASIC4.07□□□□□ -1.76
MSX2P35548 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 XIAPP3-201ENST00000312918 795 ntBASIC4.06□□□□□ -1.76
MSX2P35548 RNU6-562P-201ENST00000362731 107 ntBASIC4.06□□□□□ -1.76
MSX2P35548 SNORD3E-201ENST00000362899 217 ntBASIC4.06□□□□□ -1.76
MSX2P35548 Y_RNA.252-201ENST00000364556 101 ntBASIC4.06□□□□□ -1.76
MSX2P35548 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 SNORA75B-201ENST00000384053 137 ntBASIC4.06□□□□□ -1.76
MSX2P35548 SNORA51.8-201ENST00000384234 132 ntBASIC4.06□□□□□ -1.76
MSX2P35548 RNU6-821P-201ENST00000390995 107 ntBASIC4.06□□□□□ -1.76
MSX2P35548 SNORD70.1-201ENST00000391007 85 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL391417.1-201ENST00000404100 426 ntBASIC4.06□□□□□ -1.76
MSX2P35548 RNU4-65P-201ENST00000410473 140 ntBASIC4.06□□□□□ -1.76
MSX2P35548 RN7SKP100-201ENST00000411258 284 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX2P35548 RBMY1KP-201ENST00000423480 476 ntBASIC4.06□□□□□ -1.76
MSX2P35548 MTCYBP10-201ENST00000424905 650 ntBASIC4.06□□□□□ -1.76
MSX2P35548 FAR2P4-202ENST00000425399 584 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL732292.1-201ENST00000426692 226 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX2P35548 MRPS18BP2-201ENST00000434310 759 ntBASIC4.06□□□□□ -1.76
MSX2P35548 DHFRP3-201ENST00000455595 559 ntBASIC4.06□□□□□ -1.76
MSX2P35548 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.06□□□□□ -1.76
MSX2P35548 AC104164.2-201ENST00000496953 495 ntBASIC4.06□□□□□ -1.76
MSX2P35548 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC4.06□□□□□ -1.76
MSX2P35548 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.06□□□□□ -1.76
MSX2P35548 RNU6-764P-201ENST00000516396 105 ntBASIC4.06□□□□□ -1.76
MSX2P35548 RNU6-1069P-201ENST00000516612 133 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AC090281.1-201ENST00000523019 276 ntBASIC4.06□□□□□ -1.76
MSX2P35548 MTCO3P23-201ENST00000561363 289 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AC008269.2-201ENST00000561915 1105 ntBASIC4.06□□□□□ -1.76
MSX2P35548 RPL23AP84-201ENST00000571193 464 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL670379.6-201ENST00000603753 252 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL355598.1-201ENST00000604169 202 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL031320.1-201ENST00000604177 357 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AC008162.1-201ENST00000604718 254 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL670379.1-201ENST00000604752 252 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL354984.3-201ENST00000604803 325 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL670379.5-201ENST00000605253 252 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL670379.8-201ENST00000605353 252 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AL670379.7-201ENST00000605823 252 ntBASIC4.06□□□□□ -1.76
MSX2P35548 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX2P35548 TUG1_2.1-201ENST00000614234 87 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AC010378.1-201ENST00000619270 362 ntBASIC4.06□□□□□ -1.76
MSX2P35548 AC087385.3-201ENST00000620477 187 ntBASIC4.06□□□□□ -1.76
MSX2P35548 PLCE1P1-201ENST00000622094 305 ntBASIC4.06□□□□□ -1.76
MSX2P35548 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX2P35548 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX2P35548 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.06□□□□□ -1.76
MSX2P35548 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.06□□□□□ -1.76
MSX2P35548 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSX2P35548 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 AC027287.1-201ENST00000553115 1453 ntBASIC4.05□□□□□ -1.76
MSX2P35548 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
MSX2P35548 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
MSX2P35548 Y_RNA.557-201ENST00000384680 107 ntBASIC4.05□□□□□ -1.76
MSX2P35548 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
MSX2P35548 RNU6-837P-201ENST00000391056 108 ntBASIC4.05□□□□□ -1.76
MSX2P35548 SNORA3C-201ENST00000408792 125 ntBASIC4.05□□□□□ -1.76
MSX2P35548 RNA5SP239-201ENST00000410218 129 ntBASIC4.05□□□□□ -1.76
MSX2P35548 RN7SKP177-201ENST00000410567 355 ntBASIC4.05□□□□□ -1.76
MSX2P35548 RNU4-25P-201ENST00000410569 230 ntBASIC4.05□□□□□ -1.76
MSX2P35548 HMGB3P2-201ENST00000411913 584 ntBASIC4.05□□□□□ -1.76
MSX2P35548 RPLP0P7-201ENST00000416050 667 ntBASIC4.05□□□□□ -1.76
MSX2P35548 BX510359.2-201ENST00000417920 305 ntBASIC4.05□□□□□ -1.76
MSX2P35548 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.05□□□□□ -1.76
MSX2P35548 NUP35P1-201ENST00000422734 947 ntBASIC4.05□□□□□ -1.76
MSX2P35548 AL162389.1-201ENST00000449233 177 ntBASIC4.05□□□□□ -1.76
MSX2P35548 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX2P35548 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.05□□□□□ -1.76
MSX2P35548 HMGB3P30-201ENST00000457863 606 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms