Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC068870.2-201ENST00000620635 389 ntBASIC4.99□□□□□ -1.61
MSX1P28360 Y_RNA.789-201ENST00000622480 102 ntBASIC4.99□□□□□ -1.61
MSX1P28360 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.99□□□□□ -1.61
MSX1P28360 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX1P28360 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX1P28360 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.99□□□□□ -1.61
MSX1P28360 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
MSX1P28360 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 AC112198.2-201ENST00000426589 6996 ntBASIC4.98□□□□□ -1.61
MSX1P28360 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
MSX1P28360 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
MSX1P28360 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
MSX1P28360 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
MSX1P28360 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX1P28360 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX1P28360 SNORA25.1-201ENST00000362326 128 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RNU6-428P-201ENST00000362942 107 ntBASIC4.98□□□□□ -1.61
MSX1P28360 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 Y_RNA.435-201ENST00000384095 112 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RNU6-959P-201ENST00000384671 107 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RNU6-1154P-201ENST00000391001 104 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RN7SKP125-201ENST00000410481 302 ntBASIC4.98□□□□□ -1.61
MSX1P28360 AC119751.6-201ENST00000416712 186 ntBASIC4.98□□□□□ -1.61
MSX1P28360 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX1P28360 AL627311.1-201ENST00000431514 115 ntBASIC4.98□□□□□ -1.61
MSX1P28360 NDUFB4P8-201ENST00000435351 367 ntBASIC4.98□□□□□ -1.61
MSX1P28360 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.98□□□□□ -1.61
MSX1P28360 AL590399.6-201ENST00000446396 307 ntBASIC4.98□□□□□ -1.61
MSX1P28360 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX1P28360 snoU13.30-201ENST00000458951 104 ntBASIC4.98□□□□□ -1.61
MSX1P28360 HSPE1P6-201ENST00000479457 291 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RPS4XP1-201ENST00000482189 787 ntBASIC4.98□□□□□ -1.61
MSX1P28360 RPL21P13-201ENST00000488305 481 ntBASIC4.98□□□□□ -1.61
MSX1P28360 SNORA31.18-201ENST00000517043 134 ntBASIC4.98□□□□□ -1.61
MSX1P28360 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX1P28360 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX1P28360 FAM60BP-201ENST00000578364 658 ntBASIC4.98□□□□□ -1.61
MSX1P28360 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.98□□□□□ -1.61
MSX1P28360 MIR6748-201ENST00000610433 71 ntBASIC4.98□□□□□ -1.61
MSX1P28360 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 U73479.1-201ENST00000618062 168 ntBASIC4.98□□□□□ -1.61
MSX1P28360 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX1P28360 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX1P28360 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC4.98□□□□□ -1.61
MSX1P28360 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.98□□□□□ -1.61
MSX1P28360 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.98□□□□□ -1.61
MSX1P28360 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.97□□□□□ -1.61
MSX1P28360 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSX1P28360 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
MSX1P28360 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
MSX1P28360 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.97□□□□□ -1.61
MSX1P28360 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.97□□□□□ -1.61
MSX1P28360 RNU4-9P-201ENST00000364951 139 ntBASIC4.97□□□□□ -1.61
MSX1P28360 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 RNU6-926P-201ENST00000384075 107 ntBASIC4.97□□□□□ -1.61
MSX1P28360 RN7SKP213-201ENST00000410746 298 ntBASIC4.97□□□□□ -1.61
MSX1P28360 Y_RNA.625-201ENST00000411256 107 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX1P28360 Z82188.1-201ENST00000436709 154 ntBASIC4.97□□□□□ -1.61
MSX1P28360 RPS11P7-201ENST00000442125 465 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC016700.2-201ENST00000446011 156 ntBASIC4.97□□□□□ -1.61
MSX1P28360 RN7SL447P-201ENST00000494711 245 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC072052.1-201ENST00000496556 306 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.97□□□□□ -1.61
MSX1P28360 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSX1P28360 AC022968.1-201ENST00000567372 442 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AP005403.1-201ENST00000579720 229 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC002545.1-201ENST00000592511 181 ntBASIC4.97□□□□□ -1.61
MSX1P28360 MIR6133-201ENST00000617057 108 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AL353748.2-201ENST00000622148 471 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC090617.7-201ENST00000623952 126 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC074101.1-201ENST00000637861 241 ntBASIC4.97□□□□□ -1.61
MSX1P28360 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
MSX1P28360 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
MSX1P28360 AC006206.1-201ENST00000544842 3387 ntBASIC4.97□□□□□ -1.61
MSX1P28360 AC009812.4-201ENST00000569134 1805 ntBASIC4.97□□□□□ -1.61
MSX1P28360 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.97□□□□□ -1.61
MSX1P28360 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
MSX1P28360 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
MSX1P28360 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
MSX1P28360 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.96□□□□□ -1.61
MSX1P28360 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
MSX1P28360 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
MSX1P28360 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
MSX1P28360 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
MSX1P28360 RNU6-222P-201ENST00000362438 107 ntBASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms