Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 PRSS3P4-201ENST00000453323 162 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD9P28356 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 EIF4EP3-201ENST00000498782 656 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 ARNTL2-AS1-201ENST00000500498 804 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 LINC02469-201ENST00000506460 741 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 AC114797.1-201ENST00000514003 728 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AC022690.1-201ENST00000526681 550 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 SETP7-201ENST00000552169 453 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.66□□□□□ -1.82
HOXD9P28356 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.66□□□□□ -1.82
HOXD9P28356 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD9P28356 AC006077.1-201ENST00000604746 343 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 HMGB1P50-201ENST00000605814 607 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AC004908.2-201ENST00000609090 574 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 MIR7975-201ENST00000619350 68 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AC100810.6-201ENST00000638068 285 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 AL732372.2-225ENST00000642124 456 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 OR4G1P-203ENST00000641984 1631 ntBASIC3.66□□□□□ -1.82
HOXD9P28356 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.66□□□□□ -1.82
HOXD9P28356 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.66□□□□□ -1.82
HOXD9P28356 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.66□□□□□ -1.82
HOXD9P28356 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.82
HOXD9P28356 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
HOXD9P28356 AC006504.1-201ENST00000562493 3666 ntBASIC3.65□□□□□ -1.82
HOXD9P28356 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
HOXD9P28356 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD9P28356 AC004972.1-201ENST00000623934 2209 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD9P28356 HSPE1P11-201ENST00000339579 310 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC3.65□□□□□ -1.83
HOXD9P28356 RNU5E-8P-201ENST00000363502 116 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD9P28356 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD9P28356 MIR454-201ENST00000390180 115 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AL356057.2-201ENST00000403318 432 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 FAT1P1-201ENST00000406588 507 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC017079.2-201ENST00000416102 485 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 TOMM22P1-201ENST00000418578 312 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD9P28356 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 AL118496.2-201ENST00000448300 230 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD9P28356 snoU109.4-201ENST00000458953 143 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 RNU7-59P-201ENST00000459101 61 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC126389.1-201ENST00000477436 290 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 HMGN1P13-201ENST00000505795 138 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD9P28356 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 RNU6-27P-201ENST00000516146 107 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 RNA5SP309-201ENST00000516670 106 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC105029.1-201ENST00000520250 669 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXD9P28356 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXD9P28356 OR5D17P-201ENST00000531492 978 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AP000857.1-201ENST00000532151 543 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.65□□□□□ -1.83
HOXD9P28356 AC011611.1-201ENST00000552179 197 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AL121603.1-201ENST00000553815 142 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 AP001429.1-201ENST00000602568 530 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 SRGNP1-201ENST00000603392 451 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 MIR7851-201ENST00000610611 160 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 AC090574.1-201ENST00000623186 233 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.65□□□□□ -1.83
HOXD9P28356 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD9P28356 PRO1804-201ENST00000623780 2050 ntBASIC3.65□□□□□ -1.83
HOXD9P28356 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
HOXD9P28356 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
HOXD9P28356 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.65□□□□□ -1.83
HOXD9P28356 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD9P28356 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.65□□□□□ -1.83
HOXD9P28356 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 AC073073.2-201ENST00000609827 2578 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 AL139276.1-201ENST00000311910 1001 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
HOXD9P28356 FRG1CP-201ENST00000358464 769 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RNA5SP235-201ENST00000365411 114 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
HOXD9P28356 RNU6-1181P-201ENST00000384191 106 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RNU6-278P-201ENST00000390945 109 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.64□□□□□ -1.83
HOXD9P28356 U3.39-201ENST00000408569 239 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RNU6-193P-201ENST00000410977 107 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 RPS7P15-201ENST00000415804 584 ntBASIC3.64□□□□□ -1.83
HOXD9P28356 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.64□□□□□ -1.83
HOXD9P28356 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 134.4 ms