Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC026407.1-201ENST00000518369 204 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MTND4LP18-201ENST00000526864 291 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AP002748.2-201ENST00000528671 348 ntBASIC2.6□□□□□ -1.99
SDC1P18827 DEFB108A-201ENST00000530110 222 ntBASIC2.6□□□□□ -1.99
SDC1P18827 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC1P18827 ELOCP31-201ENST00000540463 467 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.6□□□□□ -1.99
SDC1P18827 ZNF519P3-201ENST00000557158 1032 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC090888.1-201ENST00000561335 1141 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AMZ2P1-203ENST00000565833 850 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MIR3944-201ENST00000581277 108 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MIR4325-201ENST00000583049 90 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MIR4293-201ENST00000584305 78 ntBASIC2.6□□□□□ -1.99
SDC1P18827 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AC122133.1-201ENST00000613964 233 ntBASIC2.6□□□□□ -1.99
SDC1P18827 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.6□□□□□ -1.99
SDC1P18827 AF246928.1-201ENST00000623768 87 ntBASIC2.6□□□□□ -1.99
SDC1P18827 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
SDC1P18827 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC2.6□□□□□ -1.99
SDC1P18827 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.6□□□□□ -1.99
SDC1P18827 AL049641.1-201ENST00000441055 1948 ntBASIC2.6□□□□□ -1.99
SDC1P18827 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.59□□□□□ -1.99
SDC1P18827 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.59□□□□□ -1.99
SDC1P18827 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SDC1P18827 RNU6-741P-201ENST00000383889 107 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AL031577.2-201ENST00000404133 280 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AL359634.1-202ENST00000404721 284 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AL513331.1-201ENST00000411908 397 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.59□□□□□ -1.99
SDC1P18827 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC1P18827 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC1P18827 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.59□□□□□ -1.99
SDC1P18827 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC1P18827 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.59□□□□□ -1.99
SDC1P18827 TIMM9P1-201ENST00000436122 256 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AL445567.1-201ENST00000439121 144 ntBASIC2.59□□□□□ -1.99
SDC1P18827 BNIP3P2-201ENST00000441221 577 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC2.59□□□□□ -1.99
SDC1P18827 ZNF736P5Y-201ENST00000451173 805 ntBASIC2.59□□□□□ -1.99
SDC1P18827 RNU6-420P-201ENST00000458780 107 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC104472.2-201ENST00000469035 601 ntBASIC2.59□□□□□ -1.99
SDC1P18827 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC2.59□□□□□ -1.99
SDC1P18827 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC2.59□□□□□ -1.99
SDC1P18827 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC2.59□□□□□ -1.99
SDC1P18827 AC098799.2-201ENST00000509466 868 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AF131216.2-201ENST00000512316 564 ntBASIC2.59□□□□□ -1.99
SDC1P18827 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC1P18827 RNU6-390P-201ENST00000516259 103 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC2.59□□□□□ -1.99
SDC1P18827 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC2.59□□□□□ -1.99
SDC1P18827 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.59□□□□□ -1.99
SDC1P18827 AC007115.1-201ENST00000546853 234 ntBASIC2.59□□□□□ -1.99
SDC1P18827 TRAV28-201ENST00000557548 323 ntBASIC2.59□□□□□ -1.99
SDC1P18827 MTND3P12-201ENST00000559068 328 ntBASIC2.59□□□□□ -1.99
SDC1P18827 CYCSP39-201ENST00000565821 309 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AL022161.1-201ENST00000604390 213 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC008277.2-201ENST00000605196 797 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC105129.3-201ENST00000605455 485 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC245517.5-201ENST00000611529 162 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC009159.1-201ENST00000618386 642 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.59□□□□□ -1.99
SDC1P18827 AP003122.6-201ENST00000623831 495 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC090617.7-201ENST00000623952 126 ntBASIC2.59□□□□□ -1.99
SDC1P18827 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.59□□□□□ -1.99
SDC1P18827 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
SDC1P18827 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SDC1P18827 FAM35BP-202ENST00000497389 3337 ntBASIC2.59□□□□□ -2
SDC1P18827 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.59□□□□□ -2
SDC1P18827 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
SDC1P18827 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SDC1P18827 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.58□□□□□ -2
SDC1P18827 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.58□□□□□ -2
SDC1P18827 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.58□□□□□ -2
SDC1P18827 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SDC1P18827 RNU6-533P-201ENST00000384144 107 ntBASIC2.58□□□□□ -2
SDC1P18827 RNU5A-2P-201ENST00000384337 116 ntBASIC2.58□□□□□ -2
SDC1P18827 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.58□□□□□ -2
SDC1P18827 AL592148.1-201ENST00000413568 445 ntBASIC2.58□□□□□ -2
SDC1P18827 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.58□□□□□ -2
SDC1P18827 AL353777.1-201ENST00000425552 326 ntBASIC2.58□□□□□ -2
SDC1P18827 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC2.58□□□□□ -2
SDC1P18827 AC007919.1-201ENST00000429380 217 ntBASIC2.58□□□□□ -2
SDC1P18827 RPS6P15-201ENST00000431996 751 ntBASIC2.58□□□□□ -2
SDC1P18827 USP12PX-201ENST00000432383 1057 ntBASIC2.58□□□□□ -2
SDC1P18827 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC2.58□□□□□ -2
SDC1P18827 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC2.58□□□□□ -2
SDC1P18827 Z82210.1-201ENST00000440037 231 ntBASIC2.58□□□□□ -2
SDC1P18827 PIGFP3-201ENST00000441918 722 ntBASIC2.58□□□□□ -2
SDC1P18827 BMI1P1-201ENST00000445879 941 ntBASIC2.58□□□□□ -2
SDC1P18827 AC020550.1-201ENST00000447385 163 ntBASIC2.58□□□□□ -2
SDC1P18827 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC2.58□□□□□ -2
SDC1P18827 KATNBL1P6-201ENST00000453433 915 ntBASIC2.58□□□□□ -2
SDC1P18827 RPS20P22-201ENST00000473700 357 ntBASIC2.58□□□□□ -2
SDC1P18827 KC877373.1-201ENST00000479066 408 ntBASIC2.58□□□□□ -2
SDC1P18827 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.58□□□□□ -2
SDC1P18827 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC2.58□□□□□ -2
SDC1P18827 HIGD1AP13-201ENST00000509878 289 ntBASIC2.58□□□□□ -2
SDC1P18827 PANCR-202ENST00000513690 448 ntTSL 2 BASIC2.58□□□□□ -2
SDC1P18827 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms