Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 SNORA51.6-201ENST00000384151 125 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RNU6-1207P-201ENST00000384343 107 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RNU6-921P-201ENST00000384361 107 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RPL23AP48-201ENST00000406913 488 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RNA5SP306-201ENST00000411087 107 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AL772161.1-201ENST00000439130 476 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 FTH1P25-201ENST00000447665 469 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AP000893.1-201ENST00000474462 794 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 FTH1P21-201ENST00000512179 511 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RNU6-189P-201ENST00000516120 101 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RNU6-111P-201ENST00000517179 105 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 SNORA81.3-201ENST00000517283 198 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC024224.1-201ENST00000538284 609 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 HSBP1P1-201ENST00000555205 166 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC019080.3-201ENST00000606180 444 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AP001486.3-201ENST00000615334 372 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC103705.1-201ENST00000619013 241 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 U6.114-201ENST00000636407 96 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 AC010300.1-201ENST00000600671 5134 ntBASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC39Q9UFE4 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 MTCO1P24-201ENST00000515438 1558 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 SNORD113.2-201ENST00000364166 89 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.376-201ENST00000365638 108 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 RAC1P3-201ENST00000416129 580 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AL049745.1-201ENST00000433953 286 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 CEACAMP6-201ENST00000452007 574 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 RPS23P3-201ENST00000470993 430 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 RPL7P5-201ENST00000471472 736 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AC020893.1-201ENST00000502452 580 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AC009901.1-201ENST00000506703 541 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.715-201ENST00000517082 110 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AP001781.1-201ENST00000530977 207 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 MTND4LP5-201ENST00000605152 292 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 MIR432-201ENST00000606207 94 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AC245517.5-201ENST00000611529 162 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AL161616.1-201ENST00000611867 286 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 AL357559.1-201ENST00000622228 274 ntBASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.05□□□□□ -1.6
CCDC39Q9UFE4 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC011460.1-201ENST00000636268 1834 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AL049555.1-201ENST00000562834 1933 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.39-201ENST00000362620 98 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 RNU5A-8P-201ENST00000364102 114 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 RNU1-85P-201ENST00000364127 164 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 SNORA70F-201ENST00000384142 135 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 RNU6-1093P-201ENST00000391194 107 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AL133384.1-201ENST00000412744 351 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC243428.1-201ENST00000421099 264 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AL391219.1-201ENST00000422570 483 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC011816.1-201ENST00000441346 546 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC073910.1-201ENST00000445047 438 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 HMGB1P35-201ENST00000503360 598 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 MTCO3P44-201ENST00000510977 541 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 SCARNA16.2-201ENST00000516520 172 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 Y_RNA.700-201ENST00000516806 100 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 RNU1-54P-201ENST00000517181 120 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC009511.1-201ENST00000543527 191 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC107016.1-201ENST00000550463 337 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC006254.3-201ENST00000603353 884 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AL031176.1-201ENST00000604554 466 ntBASIC5.04□□□□□ -1.6
CCDC39Q9UFE4 AC024940.4-201ENST00000605507 246 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 129.3 ms