Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.05□□□□□ -1.76
TDP1Q9NUW8 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
TDP1Q9NUW8 AL157700.1-201ENST00000561973 1432 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 ZNF285B-201ENST00000561698 1767 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNU1-108P-201ENST00000362556 161 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNU5A-1-201ENST00000362698 116 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 Y_RNA.61-201ENST00000362835 102 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 Y_RNA.142-201ENST00000363491 102 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNU6-694P-201ENST00000364071 147 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNA5SP44-201ENST00000410446 133 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RN7SKP140-201ENST00000411196 284 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 EEF1A1P40-201ENST00000412883 573 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RPL7L1P10-201ENST00000427790 463 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 CALM2P2-201ENST00000428512 440 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RPL21P112-201ENST00000434403 463 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC083863.1-201ENST00000438811 231 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC093019.1-201ENST00000443135 252 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RPL7P12-201ENST00000446719 750 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC092001.1-201ENST00000453012 261 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 snoU13.22-201ENST00000459428 104 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC078918.1-201ENST00000498515 228 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 PPBPP1-201ENST00000510807 373 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 SNORA31.3-201ENST00000516029 96 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNU1-95P-201ENST00000516357 160 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNU1-128P-201ENST00000516704 160 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RN7SKP60-201ENST00000516985 239 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RNU6-1314P-201ENST00000517139 104 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 BTF3P12-201ENST00000519620 469 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC107953.1-201ENST00000522216 297 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC243972.3-201ENST00000539655 198 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AL355836.1-201ENST00000555951 870 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 RPL23AP84-201ENST00000571193 464 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC104763.2-201ENST00000604179 382 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC004825.2-201ENST00000616634 455 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC009248.2-201ENST00000619826 254 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AL357559.1-201ENST00000622228 274 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 AP001350.1-201ENST00000601906 1524 ntBASIC4.04□□□□□ -1.76
TDP1Q9NUW8 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
TDP1Q9NUW8 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 MTND4P29-201ENST00000503122 1372 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 RNA5SP52-201ENST00000362448 134 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 Y_RNA.166-201ENST00000363730 102 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 SNORA7.2-201ENST00000364446 145 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 SNORD81.2-201ENST00000365153 76 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 PARD3-204ENST00000374768 799 ntTSL 3 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 SNORA32.2-201ENST00000384049 122 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 RNU6-190P-201ENST00000384154 102 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 RNU4-26P-201ENST00000410270 107 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC092809.3-201ENST00000415453 231 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL645937.1-202ENST00000421799 937 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 RPL35AP12-201ENST00000425362 338 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL591419.1-201ENST00000427423 339 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 KCTD9P3-201ENST00000434597 1169 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 HLA-N-201ENST00000437516 135 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 RANP8-201ENST00000444720 713 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL590639.1-201ENST00000456484 337 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 snoU13.4-201ENST00000458916 104 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 RPL21P8-201ENST00000465083 535 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC092451.1-201ENST00000480211 153 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 CCDC34P1-201ENST00000507441 517 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC017037.1-201ENST00000508460 471 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 MTND3P22-201ENST00000510932 243 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 Y_RNA.665-201ENST00000516177 98 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 SCARNA14-201ENST00000516903 136 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 IGKV2-38-201ENST00000517443 247 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 IGKV2D-23-201ENST00000518179 286 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 MTND4P7-201ENST00000523876 130 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL137161.1-201ENST00000532231 390 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AL118558.2-201ENST00000556294 238 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC174048.1-201ENST00000603389 144 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AP001330.4-201ENST00000604350 154 ntBASIC4.03□□□□□ -1.76
TDP1Q9NUW8 AC005858.4-201ENST00000623191 700 ntBASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 675.2 ms