Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 CUL1P1-201ENST00000509510 2425 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 GABRG2-229ENST00000641017 3628 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
USP44Q9H0E7 RNU6-1284P-201ENST00000363701 100 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 SNORA80A-201ENST00000363922 136 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 Y_RNA.201-201ENST00000364052 96 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 SNORA18.3-201ENST00000384122 132 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 NDUFB4P4-201ENST00000404822 243 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC007390.1-201ENST00000415722 356 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC137499.1-201ENST00000427602 88 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 ARF4P2-201ENST00000430209 526 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 TIMM9P1-201ENST00000436122 256 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 FTH1P1-201ENST00000437933 532 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC107083.1-201ENST00000439643 279 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 SSXP1-201ENST00000453640 473 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 MTND1P12-201ENST00000455231 147 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 RPS20P20-201ENST00000460498 340 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 RPS27AP1-201ENST00000475545 471 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL049830.2-201ENST00000480072 201 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC083906.5-201ENST00000503722 328 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC010424.1-201ENST00000506336 297 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 HIGD1AP13-201ENST00000509878 289 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC109464.2-201ENST00000510242 943 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 SCGB1D5P-201ENST00000515134 247 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 SCARNA15.2-201ENST00000516409 127 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 RNU6-840P-201ENST00000517275 65 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AP002748.2-201ENST00000528671 348 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AP000873.5-201ENST00000533906 236 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC034105.3-201ENST00000565294 442 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 C16orf97-203ENST00000566314 281 ntTSL 3 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 RSL24D1P11-201ENST00000591045 491 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC087752.4-201ENST00000605911 462 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 RN7SKP299-201ENST00000606679 301 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC245517.5-201ENST00000611529 162 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL390240.1-201ENST00000612950 384 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AC096644.4-201ENST00000563417 2912 ntBASIC3.64□□□□□ -1.83
USP44Q9H0E7 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC3.64□□□□□ -1.83
USP44Q9H0E7 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
USP44Q9H0E7 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP44Q9H0E7 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP44Q9H0E7 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
USP44Q9H0E7 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 RNU6-851P-201ENST00000384565 107 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL591034.1-201ENST00000407447 340 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 UBE2FP1-201ENST00000416536 447 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 MORF4L1P6-201ENST00000418771 268 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 MTND1P28-201ENST00000435623 950 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 ST13P20-201ENST00000447996 1065 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 MTCO2P18-201ENST00000457151 658 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 SNORD42A-201ENST00000459584 64 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL049714.1-201ENST00000466686 347 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 RPS3AP14-201ENST00000483907 780 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC011979.2-201ENST00000527568 352 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 MIR5047-201ENST00000579212 100 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 SNHG22-203ENST00000617833 660 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 PLCE1P1-201ENST00000622094 305 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL137790.1-201ENST00000634283 177 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 AL021368.2-201ENST00000606125 5352 ntBASIC3.63□□□□□ -1.83
USP44Q9H0E7 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
USP44Q9H0E7 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
USP44Q9H0E7 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 AC092104.1-201ENST00000497346 1441 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.62□□□□□ -1.83
USP44Q9H0E7 Y_RNA.436-201ENST00000384097 102 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 Y_RNA.553-201ENST00000384670 102 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 ELOCP17-201ENST00000414751 326 ntBASIC3.62□□□□□ -1.83
USP44Q9H0E7 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms