Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ISCA1P1-201ENST00000426679 387 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AL139289.1-201ENST00000436713 731 ntTSL 3 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AL831737.1-201ENST00000441288 271 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC009296.1-201ENST00000443146 155 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 SNORD97-201ENST00000459187 142 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 MTND2P14-201ENST00000482139 351 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 SNORA31.3-201ENST00000516029 96 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 RNU6-64P-201ENST00000517119 105 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AP001004.1-201ENST00000582468 324 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC006539.2-201ENST00000601729 572 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC098826.3-201ENST00000603823 466 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AL161798.1-201ENST00000604630 131 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 MTND4LP5-201ENST00000605152 292 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AL450336.1-201ENST00000605180 586 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 AC012150.2-201ENST00000621300 544 ntBASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 IL33-202ENST00000417746 2327 ntTSL 2 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
CHMP4AQ9BY43 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 ZNF876P-202ENST00000398732 1485 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 MIR422A-201ENST00000362286 90 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 RNU6-433P-201ENST00000363216 104 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 Y_RNA.302-201ENST00000364997 102 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 RNU6-817P-201ENST00000391083 104 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 U3.26-201ENST00000391236 204 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AL117351.1-201ENST00000438864 766 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AL445687.1-201ENST00000439946 251 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 MTATP6P30-201ENST00000443540 664 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 Z73417.1-201ENST00000447373 778 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AL354943.1-201ENST00000572103 781 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 KC877982.1-201ENST00000602313 470 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 AC140725.3-201ENST00000616193 880 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 MTND5P30-201ENST00000452896 1731 ntBASIC4.01□□□□□ -1.77
CHMP4AQ9BY43 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CHMP4AQ9BY43 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CHMP4AQ9BY43 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 RNA5SP374-201ENST00000362939 125 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 RNU6-778P-201ENST00000363269 103 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 RNU1-140P-201ENST00000365040 165 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AP002088.1-201ENST00000382740 395 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 TAS2R15P-201ENST00000390674 928 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 BTF3L4P3-201ENST00000418879 476 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC016696.1-201ENST00000446949 318 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 FABP5P15-201ENST00000453566 214 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 S100A11P2-201ENST00000467589 312 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC006445.1-201ENST00000491925 405 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 RPS27AP10-201ENST00000496103 208 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 NDUFB4P2-201ENST00000509515 391 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC008716.1-201ENST00000511084 513 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC007536.1-201ENST00000533382 349 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 AL356280.1-201ENST00000603614 379 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC011939.3-201ENST00000613686 466 ntBASIC4□□□□□ -1.77
CHMP4AQ9BY43 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC4□□□□□ -1.77
CHMP4AQ9BY43 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CHMP4AQ9BY43 MAPK10-266ENST00000641066 6555 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 VPS26BP1-201ENST00000417155 755 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 AL445669.1-201ENST00000426743 755 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 MICF-203ENST00000432679 129 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 RNU6-953P-201ENST00000459154 107 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 AC107626.1-201ENST00000471084 183 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 AC103975.1-201ENST00000482506 483 ntBASIC3.99□□□□□ -1.77
CHMP4AQ9BY43 RNU6-415P-201ENST00000516252 97 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms